Analysis of interatomic Contacts of Structural Units in PDB entry:
6LTJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6LTJ entry

There are 20 chains in PDB entry 6LTJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 41	ARG 131
B	ASP 24	GLY 101
C	THR 16	ASN 110
D	SER 33	SER 120
E	GLY 44	ARG 134
F	ASN 25	GLY 101
G	LYS 15	PRO 109
H	LYS 31	SER 120
I	SER 350	MET 1366
J	GLY 12	GLU 417
K	ASP 2	ARG 372
L	ILE 1639	SER 2285
M	SER 7	THR 381
N	HIS 423	GLN 952
O	HIS 423	GLN 952
P	LYS 125	GLU 505
Q	SER 172	LEU 276
R	GLY 13	LYS 82
X	T 18	A 136
Y	T 18	A 136

There are166 helices in PDB entry 6LTJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	54	Right-handed alpha
Helix 2	AA2	A	60	76	Right-handed alpha
Helix 3	AA3	A	82	111	Right-handed alpha
Helix 4	AA4	A	117	128	Right-handed alpha
Helix 5	AA5	B	24	29	Right-handed 310
Helix 6	AA6	B	30	42	Right-handed alpha
Helix 7	AA7	B	49	76	Right-handed alpha
Helix 8	AA8	B	82	93	Right-handed alpha
Helix 9	AA9	C	17	22	Right-handed alpha
Helix 10	AB1	C	26	37	Right-handed alpha
Helix 11	AB2	C	46	72	Right-handed alpha
Helix 12	AB3	C	79	90	Right-handed alpha
Helix 13	AB4	C	92	97	Right-handed alpha
Helix 14	AB5	D	34	46	Right-handed alpha
Helix 15	AB6	D	52	81	Right-handed alpha
Helix 16	AB7	D	87	99	Right-handed alpha
Helix 17	AB8	D	101	119	Right-handed alpha
Helix 18	AB9	E	45	57	Right-handed alpha
Helix 19	AC1	E	63	79	Right-handed alpha
Helix 20	AC2	E	85	114	Right-handed alpha
Helix 21	AC3	E	120	131	Right-handed alpha
Helix 22	AC4	F	25	29	Right-handed 310
Helix 23	AC5	F	30	42	Right-handed alpha
Helix 24	AC6	F	50	76	Right-handed alpha
Helix 25	AC7	F	82	93	Right-handed alpha
Helix 26	AC8	G	16	21	Right-handed alpha
Helix 27	AC9	G	26	37	Right-handed alpha
Helix 28	AD1	G	45	73	Right-handed alpha
Helix 29	AD2	G	79	90	Right-handed alpha
Helix 30	AD3	G	90	97	Right-handed alpha
Helix 31	AD4	H	35	43	Right-handed alpha
Helix 32	AD5	H	52	81	Right-handed alpha
Helix 33	AD6	H	87	99	Right-handed alpha
Helix 34	AD7	H	101	120	Right-handed alpha
Helix 35	AD8	I	362	387	Right-handed alpha
Helix 36	AD9	I	397	409	Right-handed alpha
Helix 37	AE1	I	409	428	Right-handed alpha
Helix 38	AE2	I	430	434	Right-handed 310
Helix 39	AE3	I	446	517	Right-handed alpha
Helix 40	AE4	I	757	768	Right-handed alpha
Helix 41	AE5	I	784	795	Right-handed alpha
Helix 42	AE6	I	812	826	Right-handed alpha
Helix 43	AE7	I	839	844	Right-handed alpha
Helix 44	AE8	I	845	849	Right-handed 310
Helix 45	AE9	I	893	898	Right-handed alpha
Helix 46	AF1	I	899	901	Right-handed 310
Helix 47	AF2	I	917	925	Right-handed alpha
Helix 48	AF3	I	931	939	Right-handed alpha
Helix 49	AF4	I	972	976	Right-handed 310
Helix 50	AF5	I	1001	1013	Right-handed alpha
Helix 51	AF6	I	1039	1048	Right-handed alpha
Helix 52	AF7	I	1055	1059	Right-handed 310
Helix 53	AF8	I	1079	1089	Right-handed alpha
Helix 54	AF9	I	1107	1120	Right-handed alpha
Helix 55	AG1	I	1179	1182	Right-handed 310
Helix 56	AG2	I	1183	1192	Right-handed alpha
Helix 57	AG3	I	1300	1306	Right-handed alpha
Helix 58	AG4	I	1311	1323	Right-handed alpha
Helix 59	AG5	I	1352	1362	Right-handed alpha
Helix 60	AG6	J	70	77	Right-handed alpha
Helix 61	AG7	J	95	110	Right-handed alpha
Helix 62	AG8	J	129	143	Right-handed alpha
Helix 63	AG9	J	154	162	Right-handed alpha
Helix 64	AH1	J	198	213	Right-handed alpha
Helix 65	AH2	J	248	266	Right-handed alpha
Helix 66	AH3	J	304	310	Right-handed 310
Helix 67	AH4	J	324	335	Right-handed alpha
Helix 68	AH5	J	340	347	Right-handed alpha
Helix 69	AH6	J	359	371	Right-handed alpha
Helix 70	AH7	J	391	399	Right-handed alpha
Helix 71	AH8	J	404	409	Right-handed alpha
Helix 72	AH9	K	80	91	Right-handed alpha
Helix 73	AI1	K	112	125	Right-handed alpha
Helix 74	AI2	K	137	146	Right-handed alpha
Helix 75	AI3	K	181	196	Right-handed alpha
Helix 76	AI4	K	204	216	Right-handed alpha
Helix 77	AI5	K	222	231	Right-handed alpha
Helix 78	AI6	K	252	257	Right-handed alpha
Helix 79	AI7	K	258	261	Right-handed 310
Helix 80	AI8	K	263	268	Right-handed alpha
Helix 81	AI9	K	273	284	Right-handed alpha
Helix 82	AJ1	K	289	296	Right-handed alpha
Helix 83	AJ2	K	301	305	Right-handed 310
Helix 84	AJ3	K	308	321	Right-handed alpha
Helix 85	AJ4	K	337	345	Right-handed alpha
Helix 86	AJ5	K	346	353	Right-handed 310
Helix 87	AJ6	K	359	366	Right-handed alpha
Helix 88	AJ7	K	367	372	Right-handed 310
Helix 89	AJ8	L	1645	1649	Right-handed 310
Helix 90	AJ9	L	1668	1679	Right-handed alpha
Helix 91	AK1	L	1680	1697	Right-handed alpha
Helix 92	AK2	L	1698	1701	Right-handed 310
Helix 93	AK3	L	1705	1709	Right-handed 310
Helix 94	AK4	L	1711	1729	Right-handed alpha
Helix 95	AK5	L	1740	1745	Right-handed alpha
Helix 96	AK6	L	1840	1846	Right-handed alpha
Helix 97	AK7	L	1971	1992	Right-handed alpha
Helix 98	AK8	L	1996	2002	Right-handed alpha
Helix 99	AK9	L	2004	2016	Right-handed alpha
Helix 100	AL1	L	2049	2068	Right-handed alpha
Helix 101	AL2	L	2069	2071	Right-handed 310
Helix 102	AL3	L	2077	2094	Right-handed alpha
Helix 103	AL4	L	2113	2127	Right-handed alpha
Helix 104	AL5	L	2128	2137	Right-handed alpha
Helix 105	AL6	L	2140	2158	Right-handed alpha
Helix 106	AL7	L	2160	2178	Right-handed alpha
Helix 107	AL8	L	2178	2187	Right-handed alpha
Helix 108	AL9	L	2190	2209	Right-handed alpha
Helix 109	AM1	L	2228	2243	Right-handed alpha
Helix 110	AM2	L	2247	2252	Right-handed alpha
Helix 111	AM3	L	2254	2264	Right-handed alpha
Helix 112	AM4	L	2268	2284	Right-handed alpha
Helix 113	AM5	M	29	36	Right-handed alpha
Helix 114	AM6	M	41	47	Right-handed alpha
Helix 115	AM7	M	56	66	Right-handed alpha
Helix 116	AM8	M	80	84	Right-handed 310
Helix 117	AM9	M	93	98	Right-handed alpha
Helix 118	AN1	M	173	181	Right-handed alpha
Helix 119	AN2	M	214	226	Right-handed alpha
Helix 120	AN3	M	229	248	Right-handed alpha
Helix 121	AN4	M	289	302	Right-handed alpha
Helix 122	AN5	M	305	324	Right-handed alpha
Helix 123	AN6	M	342	348	Right-handed alpha
Helix 124	AN7	M	357	381	Right-handed alpha
Helix 125	AN8	N	427	431	Right-handed 310
Helix 126	AN9	N	440	446	Right-handed alpha
Helix 127	AO1	N	447	452	Right-handed alpha
Helix 128	AO2	N	458	475	Right-handed alpha
Helix 129	AO3	N	482	490	Right-handed alpha
Helix 130	AO4	N	493	507	Right-handed alpha
Helix 131	AO5	N	603	616	Right-handed alpha
Helix 132	AO6	N	620	628	Right-handed alpha
Helix 133	AO7	N	631	641	Right-handed alpha
Helix 134	AO8	N	672	682	Right-handed alpha
Helix 135	AO9	N	685	702	Right-handed alpha
Helix 136	AP1	N	859	949	Right-handed alpha
Helix 137	AP2	O	439	446	Right-handed alpha
Helix 138	AP3	O	447	450	Right-handed 310
Helix 139	AP4	O	458	475	Right-handed alpha
Helix 140	AP5	O	482	490	Right-handed alpha
Helix 141	AP6	O	493	507	Right-handed alpha
Helix 142	AP7	O	602	616	Right-handed alpha
Helix 143	AP8	O	619	628	Right-handed alpha
Helix 144	AP9	O	631	641	Right-handed alpha
Helix 145	AQ1	O	645	650	Right-handed alpha
Helix 146	AQ2	O	657	661	Right-handed 310
Helix 147	AQ3	O	671	684	Right-handed alpha
Helix 148	AQ4	O	685	705	Right-handed alpha
Helix 149	AQ5	O	711	716	Right-handed alpha
Helix 150	AQ6	O	868	952	Right-handed alpha
Helix 151	AQ7	P	128	132	Right-handed 310
Helix 152	AQ8	P	134	141	Right-handed alpha
Helix 153	AQ9	P	143	173	Right-handed alpha
Helix 154	AR1	P	298	306	Right-handed alpha
Helix 155	AR2	P	312	327	Right-handed alpha
Helix 156	AR3	P	353	355	Right-handed 310
Helix 157	AR4	P	356	361	Right-handed alpha
Helix 158	AR5	P	400	411	Right-handed alpha
Helix 159	AR6	P	414	447	Right-handed alpha
Helix 160	AR7	P	447	468	Right-handed alpha
Helix 161	AR8	P	478	484	Right-handed 310
Helix 162	AR9	P	486	505	Right-handed alpha
Helix 163	AS1	Q	186	207	Right-handed alpha
Helix 164	AS2	Q	220	276	Right-handed alpha
Helix 165	AS3	R	14	38	Right-handed alpha
Helix 166	AS4	R	58	62	Right-handed 310

There are 27 sheets in PDB entry 6LTJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	B	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	B	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	98	first strand
Strand 2	G	101	102	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	F	97	98	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	50	51	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	991	992	first strand
Strand 2	I	1199	1205	parallel
Strand 3	I	995	997	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	991	992	first strand
Strand 2	I	1199	1205	parallel
Strand 3	I	1170	1173	parallel
Strand 4	I	1099	1100	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	35	38	first strand
Strand 2	J	22	27	anti-parallel
Strand 3	J	14	18	anti-parallel
Strand 4	J	119	124	parallel
Strand 5	J	148	153	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	41	43	first strand
Strand 2	J	83	85	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	88	89	first strand
Strand 2	J	92	93	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	177	183	anti-parallel
Strand 3	J	193	195	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	186	187	first strand
Strand 2	J	177	183	anti-parallel
Strand 3	J	167	172	anti-parallel
Strand 4	J	348	352	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	18	21	first strand
Strand 2	K	8	11	anti-parallel
Strand 3	K	103	107	parallel
Strand 4	K	131	136	parallel
Strand 5	K	357	358	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	176	178	first strand
Strand 2	K	160	165	anti-parallel
Strand 3	K	150	155	anti-parallel
Strand 4	K	297	300	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	1814	1816	first strand
Strand 2	O	424	426	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	26	28	first strand
Strand 2	M	89	92	anti-parallel
Strand 3	M	52	54	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	186	195	first strand
Strand 2	M	198	207	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	261	270	first strand
Strand 2	M	273	282	anti-parallel
Strand 3	M	352	355	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	424	426	first strand
Strand 2	O	533	535	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	437	439	first strand
Strand 2	R	70	73	anti-parallel
Strand 3	R	63	64	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	523	524	first strand
Strand 2	R	49	52	anti-parallel
Strand 3	R	41	42	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	309	311	first strand
Strand 2	P	294	297	anti-parallel
Strand 3	P	365	366	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6LTJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6LTJ