Analysis of interatomic Contacts of Structural Units in PDB entry:
6M0X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M0X entry

There are 3 chains in PDB entry 6M0X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 4PHE 1121
B
G 0 A 70
C
G 1 G 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6M0X. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
37 42Right-handed alpha
Helix 2
AA2
A
42 73Right-handed alpha
Helix 3
AA3
A
87 95Right-handed alpha
Helix 4
AA4
A
101 114Right-handed alpha
Helix 5
AA5
A
150 163Right-handed alpha
Helix 6
AA6
A
185 204Right-handed alpha
Helix 7
AA7
A
208 221Right-handed alpha
Helix 8
AA8
A
252 256Right-handed 310
Helix 9
AA9
A
272 286Right-handed alpha
Helix 10
AB1
A
297 311Right-handed alpha
Helix 11
AB2
A
315 326Right-handed alpha
Helix 12
AB3
A
330 334Right-handed 310
Helix 13
AB4
A
350 358Right-handed alpha
Helix 14
AB5
A
363 367Right-handed 310
Helix 15
AB6
A
368 382Right-handed alpha
Helix 16
AB7
A
384 396Right-handed alpha
Helix 17
AB8
A
402 416Right-handed alpha
Helix 18
AB9
A
416 421Right-handed alpha
Helix 19
AC1
A
428 434Right-handed alpha
Helix 20
AC2
A
435 442Right-handed alpha
Helix 21
AC3
A
445 454Right-handed alpha
Helix 22
AC4
A
469 474Right-handed alpha
Helix 23
AC5
A
479 501Right-handed alpha
Helix 24
AC6
A
516 546Right-handed alpha
Helix 25
AC7
A
552 557Right-handed 310
Helix 26
AC8
A
561 572Right-handed alpha
Helix 27
AC9
A
584 591Right-handed alpha
Helix 28
AD1
A
610 612Right-handed 310
Helix 29
AD2
A
619 626Right-handed alpha
Helix 30
AD3
A
629 634Right-handed alpha
Helix 31
AD4
A
642 653Right-handed alpha
Helix 32
AD5
A
657 666Right-handed alpha
Helix 33
AD6
A
681 705Right-handed alpha
Helix 34
AD7
A
716 726Right-handed alpha
Helix 35
AD8
A
735 750Right-handed alpha
Helix 36
AD9
A
792 801Right-handed alpha
Helix 37
AE1
A
804 808Right-handed 310
Helix 38
AE2
A
854 869Right-handed alpha
Helix 39
AE3
A
872 878Right-handed alpha
Helix 40
AE4
A
878 885Right-handed alpha
Helix 41
AE5
A
885 893Right-handed alpha
Helix 42
AE6
A
908 918Right-handed alpha
Helix 43
AE7
A
986 988Right-handed 310
Helix 44
AE8
A
1000 1011Right-handed alpha
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There are 8 sheets in PDB entry 6M0X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
710 715first strand
Strand 2
A
505 510parallel
Strand 3
A
5 10parallel
Strand 4
A
14 20anti-parallel
Strand 5
A
27 34anti-parallel
Strand 6
A
809 812parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
168 173first strand
Strand 2
A
176 181anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
595 599first strand
Strand 2
A
614 618anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
935 941first strand
Strand 2
A
842 849anti-parallel
Strand 3
A
828 833anti-parallel
Strand 4
A
957 959anti-parallel
Strand 5
A
946 947anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
896 898first strand
Strand 2
A
904 906anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
977 984first strand
Strand 2
A
964 972anti-parallel
Strand 3
A
1018 1024anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
989 990first strand
Strand 2
A
997 998anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1085 1088first strand
Strand 2
A
1055 1059anti-parallel
Strand 3
A
1039 1047anti-parallel
Strand 4
A
1028 1033anti-parallel
Strand 5
A
1094 1101anti-parallel
Strand 6
A
1107 1110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il