Analysis of interatomic Contacts of Structural Units in PDB entry:
6M17

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6M17 entry

There are 6 chains in PDB entry 6M17 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 5	HIS 609
B	ILE 21	ARG 768
E	CYS 336	LEU 518
C	VAL 5	HIS 609
D	ILE 21	ARG 768
F	CYS 336	LEU 518

There are144 helices in PDB entry 6M17. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	25	Right-handed alpha
Helix 2	AA2	A	37	49	Right-handed alpha
Helix 3	AA3	A	57	65	Right-handed alpha
Helix 4	AA4	A	70	81	Right-handed alpha
Helix 5	AA5	A	81	97	Right-handed alpha
Helix 6	AA6	A	100	105	Right-handed alpha
Helix 7	AA7	A	112	142	Right-handed alpha
Helix 8	AA8	A	163	169	Right-handed alpha
Helix 9	AA9	A	172	177	Right-handed alpha
Helix 10	AB1	A	195	212	Right-handed alpha
Helix 11	AB2	A	218	242	Right-handed alpha
Helix 12	AB3	A	250	256	Right-handed alpha
Helix 13	AB4	A	258	264	Right-handed 310
Helix 14	AB5	A	265	279	Right-handed alpha
Helix 15	AB6	A	284	291	Right-handed alpha
Helix 16	AB7	A	300	317	Right-handed alpha
Helix 17	AB8	A	317	346	Right-handed alpha
Helix 18	AB9	A	359	371	Right-handed alpha
Helix 19	AC1	A	402	408	Right-handed alpha
Helix 20	AC2	A	414	430	Right-handed alpha
Helix 21	AC3	A	430	445	Right-handed alpha
Helix 22	AC4	A	454	470	Right-handed alpha
Helix 23	AC5	A	471	474	Right-handed 310
Helix 24	AC6	A	477	507	Right-handed alpha
Helix 25	AC7	A	510	522	Right-handed alpha
Helix 26	AC8	A	527	536	Right-handed alpha
Helix 27	AC9	A	536	546	Right-handed alpha
Helix 28	AD1	A	546	554	Right-handed alpha
Helix 29	AD2	A	581	609	Right-handed alpha
Helix 30	AD3	B	22	53	Right-handed alpha
Helix 31	AD4	B	58	81	Right-handed alpha
Helix 32	AD5	B	90	102	Right-handed alpha
Helix 33	AD6	B	109	129	Right-handed alpha
Helix 34	AD7	B	147	155	Right-handed alpha
Helix 35	AD8	B	157	193	Right-handed alpha
Helix 36	AD9	B	198	204	Right-handed alpha
Helix 37	AE1	B	205	208	Right-handed 310
Helix 38	AE2	B	220	231	Right-handed alpha
Helix 39	AE3	B	233	252	Right-handed alpha
Helix 40	AE4	B	275	277	Right-handed 310
Helix 41	AE5	B	278	283	Right-handed alpha
Helix 42	AE6	B	294	299	Right-handed alpha
Helix 43	AE7	B	303	319	Right-handed alpha
Helix 44	AE8	B	326	331	Right-handed alpha
Helix 45	AE9	B	365	383	Right-handed alpha
Helix 46	AF1	B	389	393	Right-handed 310
Helix 47	AF2	B	399	413	Right-handed alpha
Helix 48	AF3	B	414	421	Right-handed alpha
Helix 49	AF4	B	431	444	Right-handed alpha
Helix 50	AF5	B	449	465	Right-handed alpha
Helix 51	AF6	B	469	471	Right-handed 310
Helix 52	AF7	B	472	484	Right-handed alpha
Helix 53	AF8	B	499	502	Right-handed 310
Helix 54	AF9	B	503	508	Right-handed alpha
Helix 55	AG1	B	513	533	Right-handed alpha
Helix 56	AG2	B	538	542	Right-handed 310
Helix 57	AG3	B	548	559	Right-handed alpha
Helix 58	AG4	B	565	572	Right-handed alpha
Helix 59	AG5	B	581	588	Right-handed alpha
Helix 60	AG6	B	588	599	Right-handed alpha
Helix 61	AG7	B	623	628	Right-handed alpha
Helix 62	AG8	B	636	658	Right-handed alpha
Helix 63	AG9	B	666	668	Right-handed 310
Helix 64	AH1	B	696	707	Right-handed alpha
Helix 65	AH2	B	707	716	Right-handed alpha
Helix 66	AH3	B	740	766	Right-handed alpha
Helix 67	AH4	E	338	344	Right-handed alpha
Helix 68	AH5	E	364	370	Right-handed alpha
Helix 69	AH6	E	383	390	Right-handed 310
Helix 70	AH7	E	406	410	Right-handed 310
Helix 71	AH8	E	416	422	Right-handed alpha
Helix 72	AH9	E	438	443	Right-handed alpha
Helix 73	AI1	C	20	25	Right-handed alpha
Helix 74	AI2	C	37	49	Right-handed alpha
Helix 75	AI3	C	57	65	Right-handed alpha
Helix 76	AI4	C	70	81	Right-handed alpha
Helix 77	AI5	C	81	97	Right-handed alpha
Helix 78	AI6	C	100	105	Right-handed alpha
Helix 79	AI7	C	112	142	Right-handed alpha
Helix 80	AI8	C	163	169	Right-handed alpha
Helix 81	AI9	C	172	177	Right-handed alpha
Helix 82	AJ1	C	195	212	Right-handed alpha
Helix 83	AJ2	C	218	242	Right-handed alpha
Helix 84	AJ3	C	250	256	Right-handed alpha
Helix 85	AJ4	C	258	264	Right-handed 310
Helix 86	AJ5	C	265	279	Right-handed alpha
Helix 87	AJ6	C	284	291	Right-handed alpha
Helix 88	AJ7	C	300	317	Right-handed alpha
Helix 89	AJ8	C	317	346	Right-handed alpha
Helix 90	AJ9	C	359	371	Right-handed alpha
Helix 91	AK1	C	402	408	Right-handed alpha
Helix 92	AK2	C	414	430	Right-handed alpha
Helix 93	AK3	C	430	445	Right-handed alpha
Helix 94	AK4	C	454	470	Right-handed alpha
Helix 95	AK5	C	471	474	Right-handed 310
Helix 96	AK6	C	477	507	Right-handed alpha
Helix 97	AK7	C	510	522	Right-handed alpha
Helix 98	AK8	C	527	536	Right-handed alpha
Helix 99	AK9	C	536	546	Right-handed alpha
Helix 100	AL1	C	546	554	Right-handed alpha
Helix 101	AL2	C	581	609	Right-handed alpha
Helix 102	AL3	D	22	53	Right-handed alpha
Helix 103	AL4	D	58	81	Right-handed alpha
Helix 104	AL5	D	90	102	Right-handed alpha
Helix 105	AL6	D	109	129	Right-handed alpha
Helix 106	AL7	D	147	155	Right-handed alpha
Helix 107	AL8	D	157	193	Right-handed alpha
Helix 108	AL9	D	198	204	Right-handed alpha
Helix 109	AM1	D	205	208	Right-handed 310
Helix 110	AM2	D	220	231	Right-handed alpha
Helix 111	AM3	D	233	252	Right-handed alpha
Helix 112	AM4	D	275	277	Right-handed 310
Helix 113	AM5	D	278	283	Right-handed alpha
Helix 114	AM6	D	294	299	Right-handed alpha
Helix 115	AM7	D	303	319	Right-handed alpha
Helix 116	AM8	D	326	331	Right-handed alpha
Helix 117	AM9	D	365	383	Right-handed alpha
Helix 118	AN1	D	389	393	Right-handed 310
Helix 119	AN2	D	399	413	Right-handed alpha
Helix 120	AN3	D	414	421	Right-handed alpha
Helix 121	AN4	D	431	444	Right-handed alpha
Helix 122	AN5	D	449	465	Right-handed alpha
Helix 123	AN6	D	469	471	Right-handed 310
Helix 124	AN7	D	472	484	Right-handed alpha
Helix 125	AN8	D	499	502	Right-handed 310
Helix 126	AN9	D	503	508	Right-handed alpha
Helix 127	AO1	D	513	533	Right-handed alpha
Helix 128	AO2	D	538	542	Right-handed 310
Helix 129	AO3	D	548	559	Right-handed alpha
Helix 130	AO4	D	565	572	Right-handed alpha
Helix 131	AO5	D	581	588	Right-handed alpha
Helix 132	AO6	D	588	599	Right-handed alpha
Helix 133	AO7	D	623	628	Right-handed alpha
Helix 134	AO8	D	636	658	Right-handed alpha
Helix 135	AO9	D	666	668	Right-handed 310
Helix 136	AP1	D	696	707	Right-handed alpha
Helix 137	AP2	D	707	716	Right-handed alpha
Helix 138	AP3	D	740	766	Right-handed alpha
Helix 139	AP4	F	338	344	Right-handed alpha
Helix 140	AP5	F	364	370	Right-handed alpha
Helix 141	AP6	F	383	390	Right-handed 310
Helix 142	AP7	F	406	410	Right-handed 310
Helix 143	AP8	F	416	422	Right-handed alpha
Helix 144	AP9	F	438	443	Right-handed alpha

There are 14 sheets in PDB entry 6M17. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	559	562	first strand
Strand 2	A	574	577	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	137	142	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	263	first strand
Strand 2	B	487	488	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	352	first strand
Strand 2	B	355	359	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	670	673	first strand
Strand 2	B	680	685	anti-parallel
Strand 3	B	618	622	anti-parallel
Strand 4	B	722	724	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	356	358	first strand
Strand 2	E	394	402	anti-parallel
Strand 3	E	508	516	anti-parallel
Strand 4	E	432	437	anti-parallel
Strand 5	E	376	379	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	448	454	first strand
Strand 2	E	492	497	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	559	562	first strand
Strand 2	C	574	577	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	137	142	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	263	first strand
Strand 2	D	487	488	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	352	first strand
Strand 2	D	355	359	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	670	673	first strand
Strand 2	D	680	685	anti-parallel
Strand 3	D	618	622	anti-parallel
Strand 4	D	722	724	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	356	358	first strand
Strand 2	F	394	402	anti-parallel
Strand 3	F	508	516	anti-parallel
Strand 4	F	432	437	anti-parallel
Strand 5	F	376	379	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	448	454	first strand
Strand 2	F	492	497	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6M17

Analysis of interatomic Contacts of Structural Units in PDB entry:
6M17