Analysis of interatomic Contacts of Structural Units in PDB entry:
6M6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6M6A entry

There are 8 chains in PDB entry 6M6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
SER 4GLN 229
B
LYS 7PRO 228
C
MET 1LYS 1118
D
LYS 3ALA 1502
E
ALA 2VAL 95
M
GLY 322LYS 825
T
G 1 G 39
N
C 1 C 39
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are125 helices in PDB entry 6M6A. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
31 47Right-handed alpha
Helix 2
AA2
A
74 84Right-handed alpha
Helix 3
AA3
A
112 114Right-handed 310
Helix 4
AA4
A
152 157Right-handed alpha
Helix 5
AA5
A
206 223Right-handed alpha
Helix 6
AA6
A
224 227Right-handed 310
Helix 7
AA7
B
31 47Right-handed alpha
Helix 8
AA8
B
74 84Right-handed alpha
Helix 9
AA9
B
112 114Right-handed 310
Helix 10
AB1
B
152 157Right-handed alpha
Helix 11
AB2
B
206 224Right-handed alpha
Helix 12
AB3
C
19 31Right-handed alpha
Helix 13
AB4
C
43 52Right-handed alpha
Helix 14
AB5
C
79 86Right-handed alpha
Helix 15
AB6
C
193 200Right-handed alpha
Helix 16
AB7
C
203 211Right-handed alpha
Helix 17
AB8
C
214 222Right-handed alpha
Helix 18
AB9
C
223 228Right-handed alpha
Helix 19
AC1
C
230 243Right-handed alpha
Helix 20
AC2
C
249 261Right-handed alpha
Helix 21
AC3
C
270 281Right-handed alpha
Helix 22
AC4
C
302 315Right-handed alpha
Helix 23
AC5
C
327 329Right-handed 310
Helix 24
AC6
C
335 359Right-handed alpha
Helix 25
AC7
C
368 372Right-handed 310
Helix 26
AC8
C
375 389Right-handed alpha
Helix 27
AC9
C
399 408Right-handed alpha
Helix 28
AD1
C
431 435Right-handed 310
Helix 29
AD2
C
487 492Right-handed alpha
Helix 30
AD3
C
536 540Right-handed 310
Helix 31
AD4
C
543 547Right-handed 310
Helix 32
AD5
C
549 553Right-handed 310
Helix 33
AD6
C
554 566Right-handed alpha
Helix 34
AD7
C
583 592Right-handed alpha
Helix 35
AD8
C
769 779Right-handed alpha
Helix 36
AD9
C
872 876Right-handed 310
Helix 37
AE1
C
882 898Right-handed alpha
Helix 38
AE2
C
910 930Right-handed alpha
Helix 39
AE3
C
937 950Right-handed alpha
Helix 40
AE4
C
958 969Right-handed alpha
Helix 41
AE5
C
1000 1004Right-handed 310
Helix 42
AE6
C
1034 1044Right-handed alpha
Helix 43
AE7
C
1045 1054Right-handed alpha
Helix 44
AE8
C
1059 1073Right-handed alpha
Helix 45
AE9
C
1082 1095Right-handed alpha
Helix 46
AF1
D
14 20Right-handed alpha
Helix 47
AF2
D
46 51Right-handed alpha
Helix 48
AF3
D
82 88Right-handed 310
Helix 49
AF4
D
102 107Right-handed alpha
Helix 50
AF5
D
110 116Right-handed alpha
Helix 51
AF6
D
119 128Right-handed alpha
Helix 52
AF7
D
155 164Right-handed alpha
Helix 53
AF8
D
423 426Right-handed 310
Helix 54
AF9
D
457 467Right-handed alpha
Helix 55
AG1
D
469 483Right-handed alpha
Helix 56
AG2
D
485 506Right-handed alpha
Helix 57
AG3
D
508 511Right-handed 310
Helix 58
AG4
D
538 559Right-handed alpha
Helix 59
AG5
D
563 583Right-handed alpha
Helix 60
AG6
D
602 608Right-handed alpha
Helix 61
AG7
D
612 620Right-handed alpha
Helix 62
AG8
D
645 653Right-handed alpha
Helix 63
AG9
D
653 664Right-handed alpha
Helix 64
AH1
D
669 679Right-handed alpha
Helix 65
AH2
D
680 683Right-handed 310
Helix 66
AH3
D
685 695Right-handed alpha
Helix 67
AH4
D
709 713Right-handed 310
Helix 68
AH5
D
729 733Right-handed 310
Helix 69
AH6
D
752 762Right-handed alpha
Helix 70
AH7
D
782 794Right-handed alpha
Helix 71
AH8
D
808 818Right-handed alpha
Helix 72
AH9
D
835 841Right-handed alpha
Helix 73
AI1
D
845 855Right-handed alpha
Helix 74
AI2
D
876 891Right-handed alpha
Helix 75
AI3
D
892 900Right-handed alpha
Helix 76
AI4
D
907 923Right-handed alpha
Helix 77
AI5
D
924 945Right-handed alpha
Helix 78
AI6
D
950 954Right-handed 310
Helix 79
AI7
D
958 980Right-handed alpha
Helix 80
AI8
D
984 1015Right-handed alpha
Helix 81
AI9
D
1018 1027Right-handed alpha
Helix 82
AJ1
D
1031 1039Right-handed alpha
Helix 83
AJ2
D
1066 1102Right-handed alpha
Helix 84
AJ3
D
1136 1145Right-handed alpha
Helix 85
AJ4
D
1167 1181Right-handed alpha
Helix 86
AJ5
D
1190 1194Right-handed 310
Helix 87
AJ6
D
1202 1206Right-handed alpha
Helix 88
AJ7
D
1220 1231Right-handed alpha
Helix 89
AJ8
D
1232 1236Right-handed 310
Helix 90
AJ9
D
1255 1263Right-handed alpha
Helix 91
AK1
D
1331 1340Right-handed alpha
Helix 92
AK2
D
1341 1360Right-handed alpha
Helix 93
AK3
D
1365 1376Right-handed alpha
Helix 94
AK4
D
1397 1411Right-handed alpha
Helix 95
AK5
D
1423 1430Right-handed alpha
Helix 96
AK6
D
1433 1441Right-handed alpha
Helix 97
AK7
D
1442 1454Right-handed alpha
Helix 98
AK8
D
1462 1469Right-handed alpha
Helix 99
AK9
D
1474 1477Right-handed 310
Helix 100
AL1
D
1478 1483Right-handed alpha
Helix 101
AL2
D
1489 1501Right-handed alpha
Helix 102
AL3
E
5 11Right-handed alpha
Helix 103
AL4
E
15 33Right-handed alpha
Helix 104
AL5
E
59 71Right-handed alpha
Helix 105
AL6
E
81 93Right-handed alpha
Helix 106
AL7
M
364 371Right-handed 310
Helix 107
AL8
M
407 420Right-handed alpha
Helix 108
AL9
M
430 437Right-handed alpha
Helix 109
AM1
M
444 460Right-handed alpha
Helix 110
AM2
M
477 488Right-handed alpha
Helix 111
AM3
M
489 491Right-handed 310
Helix 112
AM4
M
500 515Right-handed alpha
Helix 113
AM5
M
530 543Right-handed alpha
Helix 114
AM6
M
552 558Right-handed alpha
Helix 115
AM7
M
572 577Right-handed alpha
Helix 116
AM8
M
577 587Right-handed alpha
Helix 117
AM9
M
605 613Right-handed alpha
Helix 118
AN1
M
636 650Right-handed alpha
Helix 119
AN2
M
663 675Right-handed alpha
Helix 120
AN3
M
688 702Right-handed alpha
Helix 121
AN4
M
729 733Right-handed 310
Helix 122
AN5
M
734 743Right-handed alpha
Helix 123
AN6
M
763 775Right-handed alpha
Helix 124
AN7
M
781 796Right-handed alpha
Helix 125
AN8
M
812 825Right-handed alpha
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There are 54 sheets in PDB entry 6M6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
10 16first strand
Strand 2
A
20 26anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
96 100first strand
Strand 2
A
140 148anti-parallel
Strand 3
A
49 58anti-parallel
Strand 4
A
165 166anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
103 104first strand
Strand 2
A
137 138anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
108 110first strand
Strand 2
A
128 131anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
150 151first strand
Strand 2
A
169 170anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
174 184first strand
Strand 2
A
192 201anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
10 16first strand
Strand 2
B
20 28anti-parallel
Strand 3
B
193 201anti-parallel
Strand 4
B
174 183anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 103first strand
Strand 2
B
138 148anti-parallel
Strand 3
B
49 58anti-parallel
Strand 4
B
165 166anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
87 89first strand
Strand 2
B
120 122anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
108 110first strand
Strand 2
B
128 131anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
150 151first strand
Strand 2
B
169 170anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
2 5first strand
Strand 2
C
899 902parallel
Strand 3
C
579 580parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
65 73first strand
Strand 2
C
91 101anti-parallel
Strand 3
C
108 119anti-parallel
Strand 4
M
360 362anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
127 129first strand
Strand 2
C
132 136anti-parallel
Strand 3
C
392 394anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
331 334first strand
Strand 2
C
138 142anti-parallel
Strand 3
C
409 411parallel
Strand 4
C
453 454anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
145 150first strand
Strand 2
C
158 163anti-parallel
Strand 3
C
172 176anti-parallel
Strand 4
C
182 185anti-parallel
Strand 5
C
190 192anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
291 294first strand
Strand 2
C
297 300anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
460 461first strand
Strand 2
C
467 475anti-parallel
Strand 3
C
484 486anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
478 479first strand
Strand 2
C
467 475anti-parallel
Strand 3
C
531 533anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
495 497first strand
Strand 2
C
513 517anti-parallel
Strand 3
C
522 524anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
503 504first strand
Strand 2
C
507 508anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
595 597first strand
Strand 2
C
653 657anti-parallel
Strand 3
C
640 641anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
620 624first strand
Strand 2
C
610 615anti-parallel
Strand 3
C
601 607anti-parallel
Strand 4
C
648 649anti-parallel
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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
661 662first strand
Strand 2
C
665 666anti-parallel
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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
670 676first strand
Strand 2
C
869 871parallel
Strand 3
C
687 691anti-parallel
Strand 4
C
846 853parallel
Strand 5
C
838 841anti-parallel
Strand 6
C
990 996anti-parallel
Strand 7
C
670 676anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
702 713first strand
Strand 2
C
819 831anti-parallel
Strand 3
C
798 807anti-parallel
Strand 4
C
748 749anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
754 756first strand
Strand 2
C
790 791anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
759 761first strand
Strand 2
C
785 787anti-parallel
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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
971 972first strand
Strand 2
C
987 988anti-parallel
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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1006 1008first strand
Strand 2
D
626 633anti-parallel
Strand 3
D
744 748anti-parallel
Strand 4
D
700 703anti-parallel
Strand 5
D
715 720anti-parallel
Strand 6
D
641 644parallel
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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1006 1008first strand
Strand 2
D
626 633anti-parallel
Strand 3
D
726 728parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1030 1032first strand
Strand 2
D
621 623anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1097 1099first strand
Strand 2
D
8 12anti-parallel
Strand 3
D
1456 1457anti-parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
22 25first strand
Strand 2
D
90 93parallel
Strand 3
D
517 518anti-parallel
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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
99 100first strand
Strand 2
D
513 514anti-parallel
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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
152 154first strand
Strand 2
D
131 136anti-parallel
Strand 3
D
453 455anti-parallel
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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
141 142first strand
Strand 2
D
145 146anti-parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
166 170first strand
Strand 2
D
392 396anti-parallel
Strand 3
D
201 205anti-parallel
Strand 4
D
183 185anti-parallel
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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
398 399first strand
Strand 2
D
443 448anti-parallel
Strand 3
D
433 438anti-parallel
Strand 4
D
414 415anti-parallel
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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
420 422first strand
Strand 2
D
427 428anti-parallel
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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
827 829first strand
Strand 2
D
832 834anti-parallel
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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
864 868first strand
Strand 2
D
871 875anti-parallel
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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1106 1109first strand
Strand 2
D
1199 1201parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1118 1121first strand
Strand 2
D
1185 1188anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1123 1125first strand
Strand 2
D
1132 1134anti-parallel
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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1153 1155first strand
Strand 2
D
1158 1160anti-parallel
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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1207 1208first strand
Strand 2
D
1213 1214anti-parallel
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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1300 1305first strand
Strand 2
D
1290 1295anti-parallel
Strand 3
D
1279 1284anti-parallel
Strand 4
D
1317 1319anti-parallel
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There are 3 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1394 1396first strand
Strand 2
D
1378 1383anti-parallel
Strand 3
D
1416 1419anti-parallel
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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
1485 1487first strand
Strand 2
E
74 76anti-parallel
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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
47 49first strand
Strand 2
E
54 56anti-parallel
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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
346 353first strand
Strand 2
M
332 343anti-parallel
Strand 3
M
323 326anti-parallel
Strand 4
M
372 373anti-parallel
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There are 7 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
522 524first strand
Strand 2
M
548 550parallel
Strand 3
M
493 496parallel
Strand 4
M
565 571parallel
Strand 5
M
593 596parallel
Strand 6
M
465 467parallel
Strand 7
M
614 615parallel
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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
629 633first strand
Strand 2
M
753 757parallel
Strand 3
M
722 727parallel
Strand 4
M
653 657parallel
Strand 5
M
706 709parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il