Analysis of interatomic Contacts of Structural Units in PDB entry:
6MBZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6MBZ entry

There are 2 chains in PDB entry 6MBZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 138PRO 685
B
 SER 138PRO 685
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6MBZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
140 183Right-handed alpha
Helix 2
AA2
A
193 250Right-handed alpha
Helix 3
AA3
A
250 263Right-handed alpha
Helix 4
AA4
A
272 303Right-handed alpha
Helix 5
AA5
A
308 331Right-handed alpha
Helix 6
AA6
A
376 384Right-handed alpha
Helix 7
AA7
A
471 489Right-handed alpha
Helix 8
AA8
A
503 520Right-handed alpha
Helix 9
AA9
A
526 538Right-handed alpha
Helix 10
AB1
A
544 549Right-handed 310
Helix 11
AB2
A
554 560Right-handed alpha
Helix 12
AB3
A
568 584Right-handed alpha
Helix 13
AB4
A
585 591Right-handed alpha
Helix 14
AB5
A
599 609Right-handed alpha
Helix 15
AB6
A
635 639Right-handed 310
Helix 16
AB7
A
647 654Right-handed alpha
Helix 17
AB8
A
655 663Right-handed alpha
Helix 18
AB9
A
674 680Right-handed alpha
Helix 19
AC1
B
140 184Right-handed alpha
Helix 20
AC2
B
202 250Right-handed alpha
Helix 21
AC3
B
250 263Right-handed alpha
Helix 22
AC4
B
272 303Right-handed alpha
Helix 23
AC5
B
308 331Right-handed alpha
Helix 24
AC6
B
356 360Right-handed 310
Helix 25
AC7
B
376 385Right-handed alpha
Helix 26
AC8
B
475 489Right-handed alpha
Helix 27
AC9
B
503 520Right-handed alpha
Helix 28
AD1
B
526 538Right-handed alpha
Helix 29
AD2
B
545 549Right-handed 310
Helix 30
AD3
B
554 560Right-handed alpha
Helix 31
AD4
B
568 584Right-handed alpha
Helix 32
AD5
B
585 591Right-handed alpha
Helix 33
AD6
B
599 609Right-handed alpha
Helix 34
AD7
B
647 654Right-handed alpha
Helix 35
AD8
B
655 663Right-handed alpha
Helix 36
AD9
B
674 680Right-handed alpha
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There are 8 sheets in PDB entry 6MBZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 336first strand
Strand 2
A
347 354anti-parallel
Strand 3
A
411 420anti-parallel
Strand 4
A
404 406anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
342 343first strand
Strand 2
A
468 469parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 402first strand
Strand 2
A
368 375anti-parallel
Strand 3
A
440 449anti-parallel
Strand 4
A
456 462anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
627 631first strand
Strand 2
A
614 619anti-parallel
Strand 3
A
668 669parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 336first strand
Strand 2
B
347 354anti-parallel
Strand 3
B
411 424anti-parallel
Strand 4
B
394 397anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
332 336first strand
Strand 2
B
347 354anti-parallel
Strand 3
B
411 424anti-parallel
Strand 4
B
404 406anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
400 402first strand
Strand 2
B
368 375anti-parallel
Strand 3
B
440 449anti-parallel
Strand 4
B
456 462anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
617 619first strand
Strand 2
B
627 632anti-parallel
Strand 3
B
640 646anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il