Analysis of interatomic Contacts of Structural Units in PDB entry:
6MZD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6MZD entry

There are 12 chains in PDB entry 6MZD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 36	ASP 119
C	MET 28	PRO 120
D	GLU 870	LYS 971
F	ASP 210	ALA 796
H	LYS 6	LEU 77
L	PRO 13	UNK 116
N	SER 113	GLY 208
P	PHE 113	PRO 201
Q	ASN 55	ILE 128
S	LEU 31	ILE 75
T	SER 159	THR 338
Y	UNK 2	UNK 328

There are 48 helices in PDB entry 6MZD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	38	44	Right-handed alpha
Helix 2	AA2	A	59	70	Right-handed alpha
Helix 3	AA3	A	74	82	Right-handed alpha
Helix 4	AA4	C	30	49	Right-handed alpha
Helix 5	AA5	C	54	81	Right-handed alpha
Helix 6	AA6	C	89	100	Right-handed alpha
Helix 7	AA7	C	105	115	Right-handed alpha
Helix 8	AA8	D	874	889	Right-handed alpha
Helix 9	AA9	D	895	925	Right-handed alpha
Helix 10	AB1	D	940	971	Right-handed alpha
Helix 11	AB2	F	211	227	Right-handed alpha
Helix 12	AB3	F	229	254	Right-handed alpha
Helix 13	AB4	F	256	268	Right-handed alpha
Helix 14	AB5	F	275	284	Right-handed alpha
Helix 15	AB6	F	287	294	Right-handed alpha
Helix 16	AB7	F	295	300	Right-handed alpha
Helix 17	AB8	F	310	322	Right-handed alpha
Helix 18	AB9	F	327	337	Right-handed alpha
Helix 19	AC1	F	510	518	Right-handed alpha
Helix 20	AC2	H	15	26	Right-handed alpha
Helix 21	AC3	H	32	59	Right-handed alpha
Helix 22	AC4	H	67	75	Right-handed alpha
Helix 23	AC5	L	14	27	Right-handed alpha
Helix 24	AC6	L	32	60	Right-handed alpha
Helix 25	AC7	L	67	83	Right-handed alpha
Helix 26	AC8	L	87	101	Right-handed alpha
Helix 27	AC9	N	114	123	Right-handed alpha
Helix 28	AD1	N	131	142	Right-handed alpha
Helix 29	AD2	N	148	173	Right-handed alpha
Helix 30	AD3	N	196	204	Right-handed alpha
Helix 31	AD4	P	114	126	Right-handed alpha
Helix 32	AD5	P	130	140	Right-handed alpha
Helix 33	AD6	P	147	176	Right-handed alpha
Helix 34	AD7	P	183	197	Right-handed alpha
Helix 35	AD8	Q	59	71	Right-handed alpha
Helix 36	AD9	Q	78	106	Right-handed alpha
Helix 37	AE1	Q	112	124	Right-handed alpha
Helix 38	AE2	S	36	41	Right-handed alpha
Helix 39	AE3	S	42	44	Right-handed 310
Helix 40	AE4	S	50	74	Right-handed alpha
Helix 41	AE5	T	179	187	Right-handed alpha
Helix 42	AE6	T	226	244	Right-handed alpha
Helix 43	AE7	T	269	277	Right-handed alpha
Helix 44	AE8	T	317	335	Right-handed alpha
Helix 45	AE9	Y	4	18	Right-handed alpha
Helix 46	AF1	Y	120	126	Right-handed alpha
Helix 47	AF2	Y	135	140	Right-handed alpha
Helix 48	AF3	Y	310	319	Right-handed alpha

There are 10 sheets in PDB entry 6MZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	N	194	195	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	307	309	first strand
Strand 2	F	339	341	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	474	475	first strand
Strand 2	F	482	486	anti-parallel
Strand 3	F	492	496	anti-parallel
Strand 4	F	538	539	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	548	550	first strand
Strand 2	F	558	561	anti-parallel
Strand 3	F	567	570	anti-parallel
Strand 4	F	577	581	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	590	593	first strand
Strand 2	F	600	603	anti-parallel
Strand 3	F	609	612	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	630	635	first strand
Strand 2	F	642	646	anti-parallel
Strand 3	F	651	654	anti-parallel
Strand 4	F	661	665	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	672	677	first strand
Strand 2	F	683	688	anti-parallel
Strand 3	F	692	697	anti-parallel
Strand 4	F	703	708	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	714	719	first strand
Strand 2	F	725	730	anti-parallel
Strand 3	F	734	739	anti-parallel
Strand 4	F	758	760	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	766	769	first strand
Strand 2	F	778	782	anti-parallel
Strand 3	F	790	792	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	190	193	first strand
Strand 2	T	197	204	anti-parallel
Strand 3	T	209	213	anti-parallel
Strand 4	T	218	224	anti-parallel
Strand 5	T	164	173	anti-parallel
Strand 6	T	251	263	anti-parallel
Strand 7	T	309	313	anti-parallel
Strand 8	T	300	304	anti-parallel
Strand 9	T	288	295	anti-parallel
Strand 10	T	281	284	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6MZD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6MZD