Analysis of interatomic Contacts of Structural Units in PDB entry:
6N8P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6N8P entry

There is 1 chain in PDB entry 6N8P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ARG 18SER 937
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 6N8P. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
126 130Right-handed 310
Helix 2
AA2
A
170 176Right-handed alpha
Helix 3
AA3
A
177 178Right-handed 310
Helix 4
AA4
A
179 183Right-handed 310
Helix 5
AA5
A
308 312Right-handed 310
Helix 6
AA6
A
397 411Right-handed alpha
Helix 7
AA7
A
466 469Right-handed 310
Helix 8
AA8
A
502 505Right-handed 310
Helix 9
AA9
A
751 755Right-handed 310
Helix 10
AB1
A
798 802Right-handed 310
Helix 11
AB2
A
835 840Right-handed alpha
Helix 12
AB3
A
894 900Right-handed alpha
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There are 16 sheets in PDB entry 6N8P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
24 30first strand
Strand 2
A
917 922anti-parallel
Strand 3
A
908 914anti-parallel
Strand 4
A
901 903anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
35 41first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
55 59anti-parallel
Strand 4
A
65 69anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
76 81first strand
Strand 2
A
87 92anti-parallel
Strand 3
A
96 104anti-parallel
Strand 4
A
109 118anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
132 137first strand
Strand 2
A
143 148anti-parallel
Strand 3
A
153 157anti-parallel
Strand 4
A
162 169anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
191 197first strand
Strand 2
A
200 208anti-parallel
Strand 3
A
212 217anti-parallel
Strand 4
A
222 228anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
233 238first strand
Strand 2
A
244 249anti-parallel
Strand 3
A
254 258anti-parallel
Strand 4
A
270 272anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
283 289first strand
Strand 2
A
297 302anti-parallel
Strand 3
A
313 319anti-parallel
Strand 4
A
322 328anti-parallel
Strand 5
A
490 492parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
332 339first strand
Strand 2
A
350 357anti-parallel
Strand 3
A
361 365anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
387 393first strand
Strand 2
A
437 442anti-parallel
Strand 3
A
446 451anti-parallel
Strand 4
A
458 464anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
426 427first strand
Strand 2
A
933 934anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
507 512first strand
Strand 2
A
518 523anti-parallel
Strand 3
A
527 534anti-parallel
Strand 4
A
576 586anti-parallel
Strand 5
A
543 548parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
538 540first strand
Strand 2
A
571 573anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
593 597first strand
Strand 2
A
602 606anti-parallel
Strand 3
A
610 615anti-parallel
Strand 4
A
620 626anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
713 721first strand
Strand 2
A
730 737anti-parallel
Strand 3
A
741 748anti-parallel
Strand 4
A
761 769anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
776 782first strand
Strand 2
A
810 815anti-parallel
Strand 3
A
818 823anti-parallel
Strand 4
A
828 834anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
843 850first strand
Strand 2
A
862 868anti-parallel
Strand 3
A
873 877anti-parallel
Strand 4
A
883 886anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il