Analysis of interatomic Contacts of Structural Units in PDB entry:
6N8S

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6N8S entry

There are 2 chains in PDB entry 6N8S (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 12	SER 937
D	MET 12	LEU 490

There are 22 helices in PDB entry 6N8S. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	19	Right-handed alpha
Helix 2	AA2	A	164	168	Right-handed 310
Helix 3	AA3	A	170	177	Right-handed alpha
Helix 4	AA4	A	305	310	Right-handed alpha
Helix 5	AA5	A	397	411	Right-handed alpha
Helix 6	AA6	A	466	469	Right-handed 310
Helix 7	AA7	A	502	506	Right-handed 310
Helix 8	AA8	A	751	755	Right-handed 310
Helix 9	AA9	A	793	798	Right-handed alpha
Helix 10	AB1	A	799	802	Right-handed 310
Helix 11	AB2	A	835	839	Right-handed alpha
Helix 12	AB3	A	894	900	Right-handed alpha
Helix 13	AB4	D	13	19	Right-handed alpha
Helix 14	AB5	D	170	177	Right-handed alpha
Helix 15	AB6	D	397	411	Right-handed alpha
Helix 16	AB7	D	466	469	Right-handed 310
Helix 17	AB8	D	502	506	Right-handed 310
Helix 18	AB9	D	751	755	Right-handed 310
Helix 19	AC1	D	793	798	Right-handed alpha
Helix 20	AC2	D	799	802	Right-handed 310
Helix 21	AC3	D	835	839	Right-handed alpha
Helix 22	AC4	D	894	900	Right-handed alpha

There are 32 sheets in PDB entry 6N8S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	24	30	first strand
Strand 2	A	917	922	anti-parallel
Strand 3	A	908	914	anti-parallel
Strand 4	A	902	903	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	41	first strand
Strand 2	A	46	51	anti-parallel
Strand 3	A	55	59	anti-parallel
Strand 4	A	65	69	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	81	first strand
Strand 2	A	87	92	anti-parallel
Strand 3	A	96	105	anti-parallel
Strand 4	A	108	118	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	137	first strand
Strand 2	A	143	148	anti-parallel
Strand 3	A	153	157	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	196	first strand
Strand 2	A	203	208	anti-parallel
Strand 3	A	212	217	anti-parallel
Strand 4	A	222	228	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	238	first strand
Strand 2	A	244	249	anti-parallel
Strand 3	A	254	258	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	289	first strand
Strand 2	A	297	302	anti-parallel
Strand 3	A	313	319	anti-parallel
Strand 4	A	322	328	anti-parallel
Strand 5	A	490	492	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	339	first strand
Strand 2	A	350	357	anti-parallel
Strand 3	A	361	365	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	393	first strand
Strand 2	A	437	442	anti-parallel
Strand 3	A	446	451	anti-parallel
Strand 4	A	458	464	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	426	427	first strand
Strand 2	A	933	934	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	509	512	first strand
Strand 2	A	518	522	anti-parallel
Strand 3	A	527	534	anti-parallel
Strand 4	A	576	586	anti-parallel
Strand 5	A	543	548	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	541	first strand
Strand 2	A	570	573	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	597	first strand
Strand 2	A	602	606	anti-parallel
Strand 3	A	610	615	anti-parallel
Strand 4	A	620	626	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	715	721	first strand
Strand 2	A	730	736	anti-parallel
Strand 3	A	741	748	anti-parallel
Strand 4	A	761	769	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	776	782	first strand
Strand 2	A	810	815	anti-parallel
Strand 3	A	818	823	anti-parallel
Strand 4	A	828	834	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	843	852	first strand
Strand 2	A	860	868	anti-parallel
Strand 3	A	872	876	anti-parallel
Strand 4	A	883	888	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	30	first strand
Strand 2	D	917	924	anti-parallel
Strand 3	D	908	914	anti-parallel
Strand 4	D	902	903	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	41	first strand
Strand 2	D	46	51	anti-parallel
Strand 3	D	55	59	anti-parallel
Strand 4	D	65	69	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	81	first strand
Strand 2	D	87	92	anti-parallel
Strand 3	D	96	105	anti-parallel
Strand 4	D	108	118	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	137	first strand
Strand 2	D	143	148	anti-parallel
Strand 3	D	153	157	anti-parallel
Strand 4	D	163	169	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	196	first strand
Strand 2	D	203	208	anti-parallel
Strand 3	D	212	217	anti-parallel
Strand 4	D	222	228	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	238	first strand
Strand 2	D	244	249	anti-parallel
Strand 3	D	254	258	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	289	first strand
Strand 2	D	297	302	anti-parallel
Strand 3	D	313	319	anti-parallel
Strand 4	D	322	328	anti-parallel
Strand 5	D	490	492	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	339	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	361	365	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	387	393	first strand
Strand 2	D	437	442	anti-parallel
Strand 3	D	446	451	anti-parallel
Strand 4	D	458	464	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	426	427	first strand
Strand 2	D	933	934	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	509	512	first strand
Strand 2	D	518	522	anti-parallel
Strand 3	D	527	534	anti-parallel
Strand 4	D	576	586	anti-parallel
Strand 5	D	543	548	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	541	first strand
Strand 2	D	570	573	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	591	597	first strand
Strand 2	D	602	607	anti-parallel
Strand 3	D	610	615	anti-parallel
Strand 4	D	620	626	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	715	721	first strand
Strand 2	D	730	736	anti-parallel
Strand 3	D	741	748	anti-parallel
Strand 4	D	761	769	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	776	782	first strand
Strand 2	D	810	815	anti-parallel
Strand 3	D	818	823	anti-parallel
Strand 4	D	828	834	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	843	852	first strand
Strand 2	D	860	868	anti-parallel
Strand 3	D	872	877	anti-parallel
Strand 4	D	883	888	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6N8S

Analysis of interatomic Contacts of Structural Units in PDB entry:
6N8S