Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NCE entry

There are 3 chains in PDB entry 6NCE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 111PRO 207
C
T 1 G 16
D
A 1 G 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6NCE. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
118 130Right-handed alpha
Helix 2
AA2
A
136 148Right-handed alpha
Helix 3
AA3
A
149 153Right-handed 310
Helix 4
AA4
A
157 169Right-handed alpha
Helix 5
AA5
A
195 206Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6NCE.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
134 135first strand
Strand 2
A
188 191anti-parallel
Strand 3
A
172 175anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il