Analysis of interatomic Contacts of Structural Units in PDB entry:
6NCG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NCG entry

There are 2 chains in PDB entry 6NCG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14SER 326
B
 PRO 16SER 326
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6NCG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
69 81Right-handed alpha
Helix 2
AA2
A
82 94Right-handed alpha
Helix 3
AA3
A
128 132Right-handed alpha
Helix 4
AA4
A
139 160Right-handed alpha
Helix 5
AA5
A
168 170Right-handed 310
Helix 6
AA6
A
186 190Right-handed 310
Helix 7
AA7
A
194 198Right-handed 310
Helix 8
AA8
A
218 223Right-handed alpha
Helix 9
AA9
A
228 246Right-handed alpha
Helix 10
AB1
A
248 254Right-handed 310
Helix 11
AB2
A
256 270Right-handed alpha
Helix 12
AB3
A
272 279Right-handed alpha
Helix 13
AB4
A
285 297Right-handed alpha
Helix 14
AB5
A
305 314Right-handed alpha
Helix 15
AB6
B
69 81Right-handed alpha
Helix 16
AB7
B
82 94Right-handed alpha
Helix 17
AB8
B
128 132Right-handed alpha
Helix 18
AB9
B
139 160Right-handed alpha
Helix 19
AC1
B
168 170Right-handed 310
Helix 20
AC2
B
218 223Right-handed alpha
Helix 21
AC3
B
228 246Right-handed alpha
Helix 22
AC4
B
248 254Right-handed 310
Helix 23
AC5
B
256 270Right-handed alpha
Helix 24
AC6
B
272 279Right-handed alpha
Helix 25
AC7
B
285 297Right-handed alpha
Helix 26
AC8
B
305 314Right-handed alpha
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There are 5 sheets in PDB entry 6NCG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 22first strand
Strand 2
A
28 34anti-parallel
Strand 3
A
42 48anti-parallel
Strand 4
A
58 62anti-parallel
Strand 5
A
114 122anti-parallel
Strand 6
A
103 111anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 127first strand
Strand 2
A
172 175anti-parallel
Strand 3
A
182 184anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 23first strand
Strand 2
B
28 36anti-parallel
Strand 3
B
42 48anti-parallel
Strand 4
B
58 62anti-parallel
Strand 5
B
116 122anti-parallel
Strand 6
B
103 109anti-parallel
Strand 7
B
20 23anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
124 127first strand
Strand 2
B
172 175anti-parallel
Strand 3
B
182 184anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
162 163first strand
Strand 2
B
191 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il