Analysis of interatomic Contacts of Structural Units in PDB entry:
6NE3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NE3 entry

There are 11 chains in PDB entry 6NE3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 36	ARG 134
B	ALA 15	GLY 102
C	GLY 8	GLU 121
D	LYS 24	LYS 122
E	LYS 37	ALA 135
F	LYS 20	GLY 102
G	ARG 11	LYS 119
H	THR 29	ALA 121
J	C 0	T 155
I	A 52	G 207
W	THR 166	GLN 634

There are 56 helices in PDB entry 6NE3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	56	Right-handed alpha
Helix 2	AA2	A	63	79	Right-handed alpha
Helix 3	AA3	A	87	114	Right-handed alpha
Helix 4	AA4	A	120	132	Right-handed alpha
Helix 5	AA5	B	30	42	Right-handed alpha
Helix 6	AA6	B	49	76	Right-handed alpha
Helix 7	AA7	B	82	94	Right-handed alpha
Helix 8	AA8	C	16	21	Right-handed alpha
Helix 9	AA9	C	26	36	Right-handed alpha
Helix 10	AB1	C	46	72	Right-handed alpha
Helix 11	AB2	C	79	89	Right-handed alpha
Helix 12	AB3	C	90	97	Right-handed alpha
Helix 13	AB4	D	34	46	Right-handed alpha
Helix 14	AB5	D	52	81	Right-handed alpha
Helix 15	AB6	D	87	99	Right-handed alpha
Helix 16	AB7	D	101	121	Right-handed alpha
Helix 17	AB8	E	45	57	Right-handed alpha
Helix 18	AB9	E	63	76	Right-handed alpha
Helix 19	AC1	E	86	114	Right-handed alpha
Helix 20	AC2	E	120	132	Right-handed alpha
Helix 21	AC3	F	25	29	Right-handed 310
Helix 22	AC4	F	30	42	Right-handed alpha
Helix 23	AC5	F	50	76	Right-handed alpha
Helix 24	AC6	F	82	93	Right-handed alpha
Helix 25	AC7	G	16	21	Right-handed alpha
Helix 26	AC8	G	27	37	Right-handed alpha
Helix 27	AC9	G	46	73	Right-handed alpha
Helix 28	AD1	G	79	90	Right-handed alpha
Helix 29	AD2	G	91	97	Right-handed alpha
Helix 30	AD3	H	34	46	Right-handed alpha
Helix 31	AD4	H	53	81	Right-handed alpha
Helix 32	AD5	H	87	99	Right-handed alpha
Helix 33	AD6	H	100	121	Right-handed alpha
Helix 34	AD7	W	181	198	Right-handed alpha
Helix 35	AD8	W	210	226	Right-handed alpha
Helix 36	AD9	W	237	239	Right-handed 310
Helix 37	AE1	W	240	251	Right-handed alpha
Helix 38	AE2	W	263	275	Right-handed alpha
Helix 39	AE3	W	287	293	Right-handed alpha
Helix 40	AE4	W	293	298	Right-handed alpha
Helix 41	AE5	W	318	326	Right-handed alpha
Helix 42	AE6	W	344	355	Right-handed alpha
Helix 43	AE7	W	356	359	Right-handed 310
Helix 44	AE8	W	361	369	Right-handed alpha
Helix 45	AE9	W	379	392	Right-handed alpha
Helix 46	AF1	W	396	401	Right-handed alpha
Helix 47	AF2	W	417	429	Right-handed alpha
Helix 48	AF3	W	448	459	Right-handed alpha
Helix 49	AF4	W	460	463	Right-handed 310
Helix 50	AF5	W	482	499	Right-handed alpha
Helix 51	AF6	W	508	522	Right-handed alpha
Helix 52	AF7	W	534	537	Right-handed 310
Helix 53	AF8	W	538	546	Right-handed alpha
Helix 54	AF9	W	559	564	Right-handed alpha
Helix 55	AG1	W	582	592	Right-handed alpha
Helix 56	AG2	W	613	633	Right-handed alpha

There are 8 sheets in PDB entry 6NE3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	84	first strand
Strand 2	B	80	81	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	97	first strand
Strand 2	G	100	101	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	85	86	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	50	51	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	F	80	81	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	85	86	parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	201	203	first strand
Strand 2	W	333	335	parallel
Strand 3	W	304	308	parallel
Strand 4	W	232	236	parallel
Strand 5	W	282	286	parallel
Strand 6	W	257	260	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	408	413	first strand
Strand 2	W	603	608	parallel
Strand 3	W	573	576	parallel
Strand 4	W	502	506	parallel
Strand 5	W	556	558	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NE3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NE3