Analysis of interatomic Contacts of Structural Units in PDB entry:
6NEF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NEF entry

There is 1 chain in PDB entry 6NEF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 26ASP 432
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6NEF. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
33 37Right-handed 310
Helix 2
AA2
A
72 77Right-handed alpha
Helix 3
AA3
A
110 114Right-handed 310
Helix 4
AA4
A
164 169Right-handed alpha
Helix 5
AA5
A
259 265Right-handed alpha
Helix 6
AA6
A
291 301Right-handed alpha
Helix 7
AA7
A
310 314Right-handed 310
Helix 8
AA8
A
327 333Right-handed alpha
Helix 9
AA9
A
352 356Right-handed 310
Helix 10
AB1
A
401 409Right-handed alpha
Helix 11
AB2
A
424 428Right-handed 310
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There are 2 sheets in PDB entry 6NEF. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
183 184first strand
Strand 2
A
176 177anti-parallel
Strand 3
A
208 209anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
379 380first strand
Strand 2
A
386 387anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il