Analysis of interatomic Contacts of Structural Units in PDB entry:
6NFJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NFJ entry

There are 4 chains in PDB entry 6NFJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 53PRO 968
B
GLN 1VAL 121
C
PRO 191SER 213
D
PHE 53ILE 433
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 6NFJ. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
56 62Right-handed 310
Helix 2
AA2
A
108 115Right-handed alpha
Helix 3
AA3
A
133 145Right-handed alpha
Helix 4
AA4
A
154 159Right-handed alpha
Helix 5
AA5
A
168 185Right-handed alpha
Helix 6
AA6
A
199 205Right-handed alpha
Helix 7
AA7
A
211 213Right-handed 310
Helix 8
AA8
A
214 229Right-handed alpha
Helix 9
AA9
A
241 251Right-handed alpha
Helix 10
AB1
A
262 288Right-handed alpha
Helix 11
AB2
A
288 293Right-handed alpha
Helix 12
AB3
A
313 327Right-handed alpha
Helix 13
AB4
A
327 332Right-handed alpha
Helix 14
AB5
A
341 348Right-handed alpha
Helix 15
AB6
A
356 362Right-handed alpha
Helix 16
AB7
A
375 379Right-handed 310
Helix 17
AB8
A
381 385Right-handed 310
Helix 18
AB9
A
395 407Right-handed alpha
Helix 19
AC1
A
430 449Right-handed alpha
Helix 20
AC2
A
467 471Right-handed 310
Helix 21
AC3
A
493 506Right-handed alpha
Helix 22
AC4
A
579 587Right-handed alpha
Helix 23
AC5
A
602 607Right-handed alpha
Helix 24
AC6
A
616 634Right-handed alpha
Helix 25
AC7
A
652 658Right-handed alpha
Helix 26
AC8
A
659 662Right-handed 310
Helix 27
AC9
A
663 682Right-handed alpha
Helix 28
AD1
A
694 698Right-handed 310
Helix 29
AD2
A
708 729Right-handed alpha
Helix 30
AD3
A
730 735Right-handed alpha
Helix 31
AD4
A
754 769Right-handed alpha
Helix 32
AD5
A
770 773Right-handed 310
Helix 33
AD6
A
783 796Right-handed alpha
Helix 34
AD7
A
807 815Right-handed alpha
Helix 35
AD8
A
841 846Right-handed alpha
Helix 36
AD9
A
867 880Right-handed alpha
Helix 37
AE1
A
900 920Right-handed alpha
Helix 38
AE2
A
953 965Right-handed alpha
Helix 39
AE3
B
86 90Right-handed 310
Helix 40
AE4
D
55 62Right-handed 310
Helix 41
AE5
D
108 115Right-handed alpha
Helix 42
AE6
D
133 145Right-handed alpha
Helix 43
AE7
D
154 159Right-handed alpha
Helix 44
AE8
D
168 185Right-handed alpha
Helix 45
AE9
D
200 205Right-handed alpha
Helix 46
AF1
D
211 213Right-handed 310
Helix 47
AF2
D
214 230Right-handed alpha
Helix 48
AF3
D
241 251Right-handed alpha
Helix 49
AF4
D
262 288Right-handed alpha
Helix 50
AF5
D
288 293Right-handed alpha
Helix 51
AF6
D
312 327Right-handed alpha
Helix 52
AF7
D
327 336Right-handed alpha
Helix 53
AF8
D
341 348Right-handed alpha
Helix 54
AF9
D
356 361Right-handed alpha
Helix 55
AG1
D
375 379Right-handed 310
Helix 56
AG2
D
381 385Right-handed 310
Helix 57
AG3
D
395 407Right-handed alpha
Helix 58
AG4
D
429 449Right-handed alpha
Helix 59
AG5
D
467 471Right-handed 310
Helix 60
AG6
D
493 506Right-handed alpha
Helix 61
AG7
D
579 592Right-handed alpha
Helix 62
AG8
D
611 615Right-handed 310
Helix 63
AG9
D
616 634Right-handed alpha
Helix 64
AH1
D
652 658Right-handed alpha
Helix 65
AH2
D
663 682Right-handed alpha
Helix 66
AH3
D
694 698Right-handed 310
Helix 67
AH4
D
708 728Right-handed alpha
Helix 68
AH5
D
730 735Right-handed alpha
Helix 69
AH6
D
754 769Right-handed alpha
Helix 70
AH7
D
783 793Right-handed alpha
Helix 71
AH8
D
807 815Right-handed alpha
Helix 72
AH9
D
840 846Right-handed alpha
Helix 73
AI1
D
867 880Right-handed alpha
Helix 74
AI2
D
900 920Right-handed alpha
Helix 75
AI3
D
952 964Right-handed alpha
Helix 76
AI4
E
28 32Right-handed 310
Helix 77
AI5
E
86 90Right-handed 310
Helix 78
AI6
E
106 108Right-handed 310
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There are 22 sheets in PDB entry 6NFJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
86 90first strand
Strand 2
A
148 152parallel
Strand 3
A
188 194parallel
Strand 4
A
235 240parallel
Strand 5
A
295 301parallel
Strand 6
A
370 374parallel
Strand 7
A
412 417parallel
Strand 8
A
454 460parallel
Strand 9
A
86 90parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
305 306first strand
Strand 2
A
391 392anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
421 422first strand
Strand 2
A
474 475anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
479 481first strand
Strand 2
A
490 492anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
519 520first strand
Strand 2
A
966 967anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
526 533first strand
Strand 2
A
596 600parallel
Strand 3
A
636 642parallel
Strand 4
A
687 692parallel
Strand 5
A
737 743parallel
Strand 6
A
821 824parallel
Strand 7
A
885 890parallel
Strand 8
A
925 930parallel
Strand 9
A
526 533parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
746 749first strand
Strand 2
A
828 833parallel
Strand 3
A
847 849anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
932 934first strand
Strand 2
A
943 945parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
4 7first strand
Strand 2
B
18 24anti-parallel
Strand 3
B
77 82anti-parallel
Strand 4
B
67 72anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
56 59first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
34 37anti-parallel
Strand 4
B
92 97anti-parallel
Strand 5
B
112 113anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
56 59first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
34 37anti-parallel
Strand 4
B
92 97anti-parallel
Strand 5
B
117 118anti-parallel
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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
86 90first strand
Strand 2
D
148 152parallel
Strand 3
D
188 194parallel
Strand 4
D
235 240parallel
Strand 5
D
295 301parallel
Strand 6
D
370 374parallel
Strand 7
D
412 417parallel
Strand 8
D
456 460parallel
Strand 9
D
86 90parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
304 306first strand
Strand 2
D
391 393anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
421 422first strand
Strand 2
D
474 475anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
479 480first strand
Strand 2
D
491 492anti-parallel
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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
527 533first strand
Strand 2
D
596 600parallel
Strand 3
D
638 642parallel
Strand 4
D
687 692parallel
Strand 5
D
737 743parallel
Strand 6
D
821 824parallel
Strand 7
D
885 889parallel
Strand 8
D
925 930parallel
Strand 9
D
527 533parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
746 749first strand
Strand 2
D
828 833parallel
Strand 3
D
847 849anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
4 5first strand
Strand 2
E
23 24anti-parallel
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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
16 20first strand
Strand 2
E
80 85anti-parallel
Strand 3
E
67 68anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
57 59first strand
Strand 2
E
47 51anti-parallel
Strand 3
E
33 37anti-parallel
Strand 4
E
92 98anti-parallel
Strand 5
E
110 113anti-parallel
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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
57 59first strand
Strand 2
E
47 51anti-parallel
Strand 3
E
33 37anti-parallel
Strand 4
E
92 98anti-parallel
Strand 5
E
117 118anti-parallel
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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
71 72first strand
Strand 2
E
76 78anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il