Analysis of interatomic Contacts of Structural Units in PDB entry:
6NIN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NIN entry

There are 2 chains in PDB entry 6NIN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 3ALA 430
B
ALA 1ALA 218
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are230 helices in PDB entry 6NIN. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
13 21Right-handed alpha
Helix 2
AA2
A
24 34Right-handed alpha
Helix 3
AA3
A
42 45Right-handed 310
Helix 4
AA4
A
46 67Right-handed alpha
Helix 5
AA5
A
75 86Right-handed alpha
Helix 6
AA6
A
89 119Right-handed alpha
Helix 7
AA7
A
125 149Right-handed alpha
Helix 8
AA8
A
152 168Right-handed alpha
Helix 9
AA9
A
172 182Right-handed alpha
Helix 10
AB1
A
187 220Right-handed alpha
Helix 11
AB2
A
233 240Right-handed alpha
Helix 12
AB3
A
244 270Right-handed alpha
Helix 13
AB4
A
276 281Right-handed 310
Helix 14
AB5
A
295 297Right-handed 310
Helix 15
AB6
A
298 308Right-handed alpha
Helix 16
AB7
A
312 322Right-handed alpha
Helix 17
AB8
A
327 345Right-handed alpha
Helix 18
AB9
A
345 350Right-handed alpha
Helix 19
AC1
A
356 359Right-handed 310
Helix 20
AC2
A
360 382Right-handed alpha
Helix 21
AC3
A
388 406Right-handed alpha
Helix 22
AC4
A
406 412Right-handed alpha
Helix 23
AC5
A
423 430Right-handed alpha
Helix 24
AC6
B
21 35Right-handed alpha
Helix 25
AC7
B
36 39Right-handed 310
Helix 26
AC8
B
46 51Right-handed 310
Helix 27
AC9
B
59 69Right-handed alpha
Helix 28
AD1
B
117 124Right-handed alpha
Helix 29
AD2
B
126 137Right-handed alpha
Helix 30
AD3
B
143 147Right-handed 310
Helix 31
AD4
B
166 170Right-handed 310
Helix 32
AD5
B
203 220Right-handed alpha
Helix 33
AD6
B
222 253Right-handed alpha
Helix 34
AD7
C
10 37Right-handed alpha
Helix 35
AD8
C
41 46Right-handed alpha
Helix 36
AD9
C
78 88Right-handed alpha
Helix 37
AE1
C
89 93Right-handed 310
Helix 38
AE2
C
110 115Right-handed 310
Helix 39
AE3
E
13 21Right-handed alpha
Helix 40
AE4
E
24 34Right-handed alpha
Helix 41
AE5
E
42 45Right-handed 310
Helix 42
AE6
E
46 67Right-handed alpha
Helix 43
AE7
E
75 86Right-handed alpha
Helix 44
AE8
E
89 119Right-handed alpha
Helix 45
AE9
E
125 149Right-handed alpha
Helix 46
AF1
E
152 168Right-handed alpha
Helix 47
AF2
E
172 182Right-handed alpha
Helix 48
AF3
E
187 220Right-handed alpha
Helix 49
AF4
E
233 240Right-handed alpha
Helix 50
AF5
E
244 270Right-handed alpha
Helix 51
AF6
E
276 281Right-handed 310
Helix 52
AF7
E
295 297Right-handed 310
Helix 53
AF8
E
298 308Right-handed alpha
Helix 54
AF9
E
312 322Right-handed alpha
Helix 55
AG1
E
327 345Right-handed alpha
Helix 56
AG2
E
345 350Right-handed alpha
Helix 57
AG3
E
356 359Right-handed 310
Helix 58
AG4
E
360 382Right-handed alpha
Helix 59
AG5
E
388 406Right-handed alpha
Helix 60
AG6
E
406 412Right-handed alpha
Helix 61
AG7
E
423 430Right-handed alpha
Helix 62
AG8
F
21 35Right-handed alpha
Helix 63
AG9
F
36 39Right-handed 310
Helix 64
AH1
F
46 51Right-handed 310
Helix 65
AH2
F
59 69Right-handed alpha
Helix 66
AH3
F
102 107Right-handed alpha
Helix 67
AH4
F
117 124Right-handed alpha
Helix 68
AH5
F
126 137Right-handed alpha
Helix 69
AH6
F
143 147Right-handed 310
Helix 70
AH7
F
166 170Right-handed 310
Helix 71
AH8
F
203 220Right-handed alpha
Helix 72
AH9
F
222 253Right-handed alpha
Helix 73
AI1
G
10 37Right-handed alpha
Helix 74
AI2
G
41 46Right-handed alpha
Helix 75
AI3
G
78 88Right-handed alpha
Helix 76
AI4
G
89 93Right-handed 310
Helix 77
AI5
G
110 115Right-handed 310
Helix 78
AI6
K
13 21Right-handed alpha
Helix 79
AI7
K
24 34Right-handed alpha
Helix 80
AI8
K
42 45Right-handed 310
Helix 81
AI9
K
46 67Right-handed alpha
Helix 82
AJ1
K
75 86Right-handed alpha
Helix 83
AJ2
K
89 119Right-handed alpha
Helix 84
AJ3
K
125 149Right-handed alpha
Helix 85
AJ4
K
152 168Right-handed alpha
Helix 86
AJ5
K
172 182Right-handed alpha
Helix 87
AJ6
K
187 220Right-handed alpha
Helix 88
AJ7
K
233 240Right-handed alpha
Helix 89
AJ8
K
246 270Right-handed alpha
Helix 90
AJ9
K
276 281Right-handed 310
Helix 91
AK1
K
295 297Right-handed 310
Helix 92
AK2
K
298 308Right-handed alpha
Helix 93
AK3
K
312 322Right-handed alpha
Helix 94
AK4
K
327 345Right-handed alpha
Helix 95
AK5
K
345 350Right-handed alpha
Helix 96
AK6
K
356 359Right-handed 310
Helix 97
AK7
K
360 382Right-handed alpha
Helix 98
AK8
K
388 406Right-handed alpha
Helix 99
AK9
K
406 412Right-handed alpha
Helix 100
AL1
K
423 430Right-handed alpha
Helix 101
AL2
L
21 35Right-handed alpha
Helix 102
AL3
L
36 39Right-handed 310
Helix 103
AL4
L
46 51Right-handed 310
Helix 104
AL5
L
59 69Right-handed alpha
Helix 105
AL6
L
117 124Right-handed alpha
Helix 106
AL7
L
126 137Right-handed alpha
Helix 107
AL8
L
143 147Right-handed 310
Helix 108
AL9
L
166 170Right-handed 310
Helix 109
AM1
L
203 220Right-handed alpha
Helix 110
AM2
L
222 253Right-handed alpha
Helix 111
AM3
M
10 37Right-handed alpha
Helix 112
AM4
M
41 46Right-handed alpha
Helix 113
AM5
M
78 88Right-handed alpha
Helix 114
AM6
M
89 93Right-handed 310
Helix 115
AM7
M
110 115Right-handed 310
Helix 116
AM8
O
13 21Right-handed alpha
Helix 117
AM9
O
24 34Right-handed alpha
Helix 118
AN1
O
42 45Right-handed 310
Helix 119
AN2
O
46 67Right-handed alpha
Helix 120
AN3
O
75 86Right-handed alpha
Helix 121
AN4
O
89 119Right-handed alpha
Helix 122
AN5
O
125 149Right-handed alpha
Helix 123
AN6
O
152 168Right-handed alpha
Helix 124
AN7
O
172 182Right-handed alpha
Helix 125
AN8
O
187 220Right-handed alpha
Helix 126
AN9
O
233 240Right-handed alpha
Helix 127
AO1
O
244 270Right-handed alpha
Helix 128
AO2
O
276 281Right-handed 310
Helix 129
AO3
O
295 297Right-handed 310
Helix 130
AO4
O
298 308Right-handed alpha
Helix 131
AO5
O
312 322Right-handed alpha
Helix 132
AO6
O
327 345Right-handed alpha
Helix 133
AO7
O
345 350Right-handed alpha
Helix 134
AO8
O
356 359Right-handed 310
Helix 135
AO9
O
360 382Right-handed alpha
Helix 136
AP1
O
388 406Right-handed alpha
Helix 137
AP2
O
406 412Right-handed alpha
Helix 138
AP3
O
423 430Right-handed alpha
Helix 139
AP4
P
21 35Right-handed alpha
Helix 140
AP5
P
36 39Right-handed 310
Helix 141
AP6
P
46 51Right-handed 310
Helix 142
AP7
P
59 69Right-handed alpha
Helix 143
AP8
P
117 124Right-handed alpha
Helix 144
AP9
P
126 137Right-handed alpha
Helix 145
AQ1
P
143 147Right-handed 310
Helix 146
AQ2
P
166 170Right-handed 310
Helix 147
AQ3
P
203 220Right-handed alpha
Helix 148
AQ4
P
222 253Right-handed alpha
Helix 149
AQ5
Q
10 37Right-handed alpha
Helix 150
AQ6
Q
41 46Right-handed alpha
Helix 151
AQ7
Q
78 88Right-handed alpha
Helix 152
AQ8
Q
89 93Right-handed 310
Helix 153
AQ9
Q
110 115Right-handed 310
Helix 154
AR1
S
13 21Right-handed alpha
Helix 155
AR2
S
24 34Right-handed alpha
Helix 156
AR3
S
42 45Right-handed 310
Helix 157
AR4
S
46 67Right-handed alpha
Helix 158
AR5
S
75 86Right-handed alpha
Helix 159
AR6
S
89 119Right-handed alpha
Helix 160
AR7
S
125 149Right-handed alpha
Helix 161
AR8
S
152 168Right-handed alpha
Helix 162
AR9
S
172 182Right-handed alpha
Helix 163
AS1
S
187 220Right-handed alpha
Helix 164
AS2
S
233 240Right-handed alpha
Helix 165
AS3
S
244 270Right-handed alpha
Helix 166
AS4
S
276 281Right-handed 310
Helix 167
AS5
S
295 297Right-handed 310
Helix 168
AS6
S
298 308Right-handed alpha
Helix 169
AS7
S
312 322Right-handed alpha
Helix 170
AS8
S
327 345Right-handed alpha
Helix 171
AS9
S
345 350Right-handed alpha
Helix 172
AT1
S
356 359Right-handed 310
Helix 173
AT2
S
360 382Right-handed alpha
Helix 174
AT3
S
388 406Right-handed alpha
Helix 175
AT4
S
406 412Right-handed alpha
Helix 176
AT5
S
423 430Right-handed alpha
Helix 177
AT6
T
21 35Right-handed alpha
Helix 178
AT7
T
36 39Right-handed 310
Helix 179
AT8
T
46 51Right-handed 310
Helix 180
AT9
T
59 69Right-handed alpha
Helix 181
AU1
T
117 124Right-handed alpha
Helix 182
AU2
T
126 137Right-handed alpha
Helix 183
AU3
T
143 147Right-handed 310
Helix 184
AU4
T
166 170Right-handed 310
Helix 185
AU5
T
203 220Right-handed alpha
Helix 186
AU6
T
222 253Right-handed alpha
Helix 187
AU7
U
10 37Right-handed alpha
Helix 188
AU8
U
41 46Right-handed alpha
Helix 189
AU9
U
78 88Right-handed alpha
Helix 190
AV1
U
89 93Right-handed 310
Helix 191
AV2
U
110 115Right-handed 310
Helix 192
AV3
W
13 21Right-handed alpha
Helix 193
AV4
W
24 34Right-handed alpha
Helix 194
AV5
W
42 45Right-handed 310
Helix 195
AV6
W
46 66Right-handed alpha
Helix 196
AV7
W
75 86Right-handed alpha
Helix 197
AV8
W
89 119Right-handed alpha
Helix 198
AV9
W
125 149Right-handed alpha
Helix 199
AW1
W
152 165Right-handed alpha
Helix 200
AW2
W
166 169Right-handed 310
Helix 201
AW3
W
172 182Right-handed alpha
Helix 202
AW4
W
187 220Right-handed alpha
Helix 203
AW5
W
233 240Right-handed alpha
Helix 204
AW6
W
246 270Right-handed alpha
Helix 205
AW7
W
276 281Right-handed 310
Helix 206
AW8
W
295 297Right-handed 310
Helix 207
AW9
W
298 308Right-handed alpha
Helix 208
AX1
W
312 322Right-handed alpha
Helix 209
AX2
W
327 345Right-handed alpha
Helix 210
AX3
W
345 350Right-handed alpha
Helix 211
AX4
W
356 359Right-handed 310
Helix 212
AX5
W
360 382Right-handed alpha
Helix 213
AX6
W
388 406Right-handed alpha
Helix 214
AX7
W
406 412Right-handed alpha
Helix 215
AX8
W
423 430Right-handed alpha
Helix 216
AX9
X
21 35Right-handed alpha
Helix 217
AY1
X
36 39Right-handed 310
Helix 218
AY2
X
46 51Right-handed 310
Helix 219
AY3
X
59 69Right-handed alpha
Helix 220
AY4
X
117 124Right-handed alpha
Helix 221
AY5
X
126 137Right-handed alpha
Helix 222
AY6
X
143 147Right-handed 310
Helix 223
AY7
X
166 170Right-handed 310
Helix 224
AY8
X
203 220Right-handed alpha
Helix 225
AY9
X
222 253Right-handed alpha
Helix 226
AZ1
Y
10 37Right-handed alpha
Helix 227
AZ2
Y
41 46Right-handed alpha
Helix 228
AZ3
Y
78 88Right-handed alpha
Helix 229
AZ4
Y
89 93Right-handed 310
Helix 230
AZ5
Y
110 115Right-handed 310
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There are 36 sheets in PDB entry 6NIN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
36 38first strand
Strand 2
A
241 243anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
71 73first strand
Strand 2
B
80 82anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
155 157first strand
Strand 2
B
181 183anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
50 53first strand
Strand 2
C
183 186anti-parallel
Strand 3
C
176 178anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
62 67first strand
Strand 2
C
70 76anti-parallel
Strand 3
C
122 126anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
137 141first strand
Strand 2
C
146 149anti-parallel
Strand 3
C
154 156anti-parallel
Strand 4
C
162 164anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
36 38first strand
Strand 2
E
241 243anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
71 73first strand
Strand 2
F
80 82anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
155 157first strand
Strand 2
F
181 183anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
50 53first strand
Strand 2
G
183 186anti-parallel
Strand 3
G
176 178anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
62 67first strand
Strand 2
G
70 76anti-parallel
Strand 3
G
122 126anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
137 141first strand
Strand 2
G
146 149anti-parallel
Strand 3
G
154 156anti-parallel
Strand 4
G
162 164anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
36 38first strand
Strand 2
K
241 243anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
71 73first strand
Strand 2
L
80 82anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
155 157first strand
Strand 2
L
181 183anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
50 53first strand
Strand 2
M
183 186anti-parallel
Strand 3
M
176 178anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
62 67first strand
Strand 2
M
70 76anti-parallel
Strand 3
M
122 126anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
137 141first strand
Strand 2
M
146 149anti-parallel
Strand 3
M
154 156anti-parallel
Strand 4
M
162 164anti-parallel
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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
O
36 38first strand
Strand 2
O
241 243anti-parallel
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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
71 73first strand
Strand 2
P
80 82anti-parallel
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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
P
155 157first strand
Strand 2
P
181 183anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
50 53first strand
Strand 2
Q
183 186anti-parallel
Strand 3
Q
176 178anti-parallel
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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
62 67first strand
Strand 2
Q
70 76anti-parallel
Strand 3
Q
122 126anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Q
137 141first strand
Strand 2
Q
146 149anti-parallel
Strand 3
Q
154 156anti-parallel
Strand 4
Q
162 164anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
S
36 38first strand
Strand 2
S
241 243anti-parallel
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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
71 73first strand
Strand 2
T
80 82anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
T
155 157first strand
Strand 2
T
181 183anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
50 53first strand
Strand 2
U
183 186anti-parallel
Strand 3
U
176 178anti-parallel
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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
62 67first strand
Strand 2
U
70 76anti-parallel
Strand 3
U
122 126anti-parallel
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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
U
137 141first strand
Strand 2
U
146 149anti-parallel
Strand 3
U
154 156anti-parallel
Strand 4
U
162 164anti-parallel
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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
W
36 38first strand
Strand 2
W
241 243anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
71 73first strand
Strand 2
X
80 82anti-parallel
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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
X
155 157first strand
Strand 2
X
181 183anti-parallel
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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
50 53first strand
Strand 2
Y
183 186anti-parallel
Strand 3
Y
176 178anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
62 67first strand
Strand 2
Y
70 76anti-parallel
Strand 3
Y
122 126anti-parallel
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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
Y
137 141first strand
Strand 2
Y
146 149anti-parallel
Strand 3
Y
154 156anti-parallel
Strand 4
Y
162 164anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il