Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NJ9 entry

There are 16 chains in PDB entry 6NJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 37	PHE 78
A	THR 80	VAL 89
A	ALA 91	ILE 119
A	PRO 121	ALA 135
B	ALA 15	GLY 102
C	ARG 11	LYS 119
D	ARG 30	ALA 124
E	LYS 37	PHE 78
E	THR 80	VAL 89
E	ALA 91	ILE 119
E	PRO 121	ALA 135
F	ALA 15	GLY 102
G	ARG 11	LYS 119
H	ARG 30	ALA 124
I	T 2	T 147
J	A 1	G 39

There are 66 helices in PDB entry 6NJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	56	Right-handed alpha
Helix 2	AA2	A	63	75	Right-handed alpha
Helix 3	AA3	A	76	78	Right-handed 310
Helix 4	AA4	A	85	114	Right-handed alpha
Helix 5	AA5	A	120	131	Right-handed alpha
Helix 6	AA6	B	25	29	Right-handed 310
Helix 7	AA7	B	30	42	Right-handed alpha
Helix 8	AA8	B	49	76	Right-handed alpha
Helix 9	AA9	B	82	92	Right-handed alpha
Helix 10	AB1	C	16	22	Right-handed alpha
Helix 11	AB2	C	26	36	Right-handed alpha
Helix 12	AB3	C	46	72	Right-handed alpha
Helix 13	AB4	C	79	90	Right-handed alpha
Helix 14	AB5	C	92	97	Right-handed alpha
Helix 15	AB6	D	37	49	Right-handed alpha
Helix 16	AB7	D	55	84	Right-handed alpha
Helix 17	AB8	D	90	102	Right-handed alpha
Helix 18	AB9	D	103	123	Right-handed alpha
Helix 19	AC1	E	44	56	Right-handed alpha
Helix 20	AC2	E	63	75	Right-handed alpha
Helix 21	AC3	E	76	78	Right-handed 310
Helix 22	AC4	E	85	114	Right-handed alpha
Helix 23	AC5	E	120	131	Right-handed alpha
Helix 24	AC6	F	25	29	Right-handed 310
Helix 25	AC7	F	30	42	Right-handed alpha
Helix 26	AC8	F	49	76	Right-handed alpha
Helix 27	AC9	F	82	92	Right-handed alpha
Helix 28	AD1	G	16	22	Right-handed alpha
Helix 29	AD2	G	26	36	Right-handed alpha
Helix 30	AD3	G	46	72	Right-handed alpha
Helix 31	AD4	G	79	90	Right-handed alpha
Helix 32	AD5	G	92	97	Right-handed alpha
Helix 33	AD6	H	37	49	Right-handed alpha
Helix 34	AD7	H	55	84	Right-handed alpha
Helix 35	AD8	H	90	102	Right-handed alpha
Helix 36	AD9	H	103	123	Right-handed alpha
Helix 37	AE1	K	32	48	Right-handed alpha
Helix 38	AE2	K	48	56	Right-handed alpha
Helix 39	AE3	K	67	89	Right-handed alpha
Helix 40	AE4	K	103	119	Right-handed alpha
Helix 41	AE5	K	121	127	Right-handed 310
Helix 42	AE6	K	140	151	Right-handed alpha
Helix 43	AE7	K	167	177	Right-handed alpha
Helix 44	AE8	K	189	210	Right-handed alpha
Helix 45	AE9	K	228	234	Right-handed alpha
Helix 46	AF1	K	245	258	Right-handed alpha
Helix 47	AF2	K	286	289	Right-handed 310
Helix 48	AF3	K	319	330	Right-handed alpha
Helix 49	AF4	L	22	35	Right-handed alpha
Helix 50	AF5	L	37	39	Right-handed 310
Helix 51	AF6	L	56	60	Right-handed 310
Helix 52	AF7	M	32	48	Right-handed alpha
Helix 53	AF8	M	48	56	Right-handed alpha
Helix 54	AF9	M	67	89	Right-handed alpha
Helix 55	AG1	M	103	119	Right-handed alpha
Helix 56	AG2	M	121	127	Right-handed 310
Helix 57	AG3	M	140	151	Right-handed alpha
Helix 58	AG4	M	167	177	Right-handed alpha
Helix 59	AG5	M	189	210	Right-handed alpha
Helix 60	AG6	M	228	234	Right-handed alpha
Helix 61	AG7	M	245	258	Right-handed alpha
Helix 62	AG8	M	286	289	Right-handed 310
Helix 63	AG9	M	319	330	Right-handed alpha
Helix 64	AH1	N	22	35	Right-handed alpha
Helix 65	AH2	N	37	39	Right-handed 310
Helix 66	AH3	N	56	60	Right-handed 310

There are 12 sheets in PDB entry 6NJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	B	45	46	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	98	first strand
Strand 2	G	100	102	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	D	88	89	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	78	first strand
Strand 2	D	53	54	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	F	96	98	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	F	45	46	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	42	43	first strand
Strand 2	H	88	89	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	78	first strand
Strand 2	H	53	54	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	215	219	first strand
Strand 2	K	181	185	parallel
Strand 3	K	159	162	parallel
Strand 4	K	237	240	parallel
Strand 5	K	265	268	parallel
Strand 6	K	314	317	anti-parallel
Strand 7	K	291	294	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	12	16	first strand
Strand 2	L	2	6	anti-parallel
Strand 3	L	66	71	parallel
Strand 4	L	41	45	anti-parallel
Strand 5	L	48	49	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	215	219	first strand
Strand 2	M	181	185	parallel
Strand 3	M	159	162	parallel
Strand 4	M	237	240	parallel
Strand 5	M	265	268	parallel
Strand 6	M	314	317	anti-parallel
Strand 7	M	291	294	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	12	16	first strand
Strand 2	N	2	6	anti-parallel
Strand 3	N	66	71	parallel
Strand 4	N	41	45	anti-parallel
Strand 5	N	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NJ9