Analysis of interatomic Contacts of Structural Units in PDB entry:
6NMY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NMY entry

There are 7 chains in PDB entry 6NMY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
PRO 26GLN 295
M
THR 28GLN 295
A
GLU 25PRO 239
C
GLU 25PRO 239
I
TYR 13ASN 120
J
TYR 13ASN 120
B
ASP 241HIS 304
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6NMY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
F
169 174Right-handed alpha
Helix 2
AA2
F
203 205Right-handed 310
Helix 3
AA3
M
63 65Right-handed 310
Helix 4
AA4
M
169 174Right-handed alpha
Helix 5
AA5
M
202 206Right-handed alpha
Helix 6
AA6
A
27 33Right-handed alpha
Helix 7
AA7
A
51 55Right-handed alpha
Helix 8
AA8
A
181 185Right-handed 310
Helix 9
AA9
C
27 33Right-handed alpha
Helix 10
AB1
C
52 56Right-handed 310
Helix 11
AB2
C
128 130Right-handed 310
Helix 12
AB3
C
181 185Right-handed 310
Helix 13
AB4
I
14 27Right-handed alpha
Helix 14
AB5
I
36 40Right-handed 310
Helix 15
AB6
I
41 50Right-handed alpha
Helix 16
AB7
I
53 65Right-handed alpha
Helix 17
AB8
I
66 68Right-handed 310
Helix 18
AB9
I
71 81Right-handed alpha
Helix 19
AC1
I
82 85Right-handed 310
Helix 20
AC2
I
103 118Right-handed alpha
Helix 21
AC3
J
15 27Right-handed alpha
Helix 22
AC4
J
36 40Right-handed 310
Helix 23
AC5
J
41 50Right-handed alpha
Helix 24
AC6
J
53 65Right-handed alpha
Helix 25
AC7
J
66 68Right-handed 310
Helix 26
AC8
J
71 80Right-handed alpha
Helix 27
AC9
J
81 85Right-handed 310
Helix 28
AD1
J
103 119Right-handed alpha
Helix 29
AD2
B
266 272Right-handed alpha
Helix 30
AD3
B
335 337Right-handed 310
Helix 31
AD4
D
266 272Right-handed alpha
Helix 32
AD5
D
335 337Right-handed 310
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There are 29 sheets in PDB entry 6NMY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
31 33first strand
Strand 2
F
38 40anti-parallel
Strand 3
F
67 69anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
50 54first strand
Strand 2
F
79 85anti-parallel
Strand 3
F
90 96anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
108 115first strand
Strand 2
F
119 125anti-parallel
Strand 3
F
162 167anti-parallel
Strand 4
F
153 156anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
147 150first strand
Strand 2
F
135 142anti-parallel
Strand 3
F
179 187anti-parallel
Strand 4
F
192 201anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
212 217first strand
Strand 2
F
221 227anti-parallel
Strand 3
F
259 263anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
250 252first strand
Strand 2
F
236 244anti-parallel
Strand 3
F
268 276anti-parallel
Strand 4
F
289 291anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
31 33first strand
Strand 2
M
38 40anti-parallel
Strand 3
M
67 69anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
58 61first strand
Strand 2
M
50 54anti-parallel
Strand 3
M
79 85anti-parallel
Strand 4
M
94 96anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
108 115first strand
Strand 2
M
119 125anti-parallel
Strand 3
M
162 167anti-parallel
Strand 4
M
154 156anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
148 150first strand
Strand 2
M
135 142anti-parallel
Strand 3
M
179 187anti-parallel
Strand 4
M
192 201anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
212 217first strand
Strand 2
M
221 227anti-parallel
Strand 3
M
259 263anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
M
250 252first strand
Strand 2
M
236 244anti-parallel
Strand 3
M
267 276anti-parallel
Strand 4
M
289 292anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 37first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
91 98anti-parallel
Strand 4
A
48 50anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 37first strand
Strand 2
A
43 46anti-parallel
Strand 3
A
91 98anti-parallel
Strand 4
A
75 77anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
70 72first strand
Strand 2
A
59 64anti-parallel
Strand 3
A
108 115anti-parallel
Strand 4
B
330 333anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 126first strand
Strand 2
B
318 325anti-parallel
Strand 3
B
274 279anti-parallel
Strand 4
B
287 288anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
137 143first strand
Strand 2
A
148 153anti-parallel
Strand 3
A
194 197anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
186 190first strand
Strand 2
A
169 177anti-parallel
Strand 3
A
207 216anti-parallel
Strand 4
A
233 236anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
34 37first strand
Strand 2
C
43 50anti-parallel
Strand 3
C
91 98anti-parallel
Strand 4
C
75 77anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
70 72first strand
Strand 2
C
59 64anti-parallel
Strand 3
C
108 115anti-parallel
Strand 4
D
329 333anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
121 126first strand
Strand 2
D
318 325anti-parallel
Strand 3
D
274 279anti-parallel
Strand 4
D
287 288anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
137 142first strand
Strand 2
C
148 153anti-parallel
Strand 3
C
194 197anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
186 190first strand
Strand 2
C
169 177anti-parallel
Strand 3
C
207 216anti-parallel
Strand 4
C
233 236anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
246 252first strand
Strand 2
B
257 265anti-parallel
Strand 3
B
301 309anti-parallel
Strand 4
B
294 295anti-parallel
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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
344 350first strand
Strand 2
B
353 359anti-parallel
Strand 3
B
396 398anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
387 392first strand
Strand 2
B
370 378anti-parallel
Strand 3
B
407 416anti-parallel
Strand 4
B
432 435anti-parallel
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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
246 252first strand
Strand 2
D
257 265anti-parallel
Strand 3
D
301 309anti-parallel
Strand 4
D
292 297anti-parallel
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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
344 350first strand
Strand 2
D
353 359anti-parallel
Strand 3
D
396 398anti-parallel
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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
387 392first strand
Strand 2
D
370 378anti-parallel
Strand 3
D
407 416anti-parallel
Strand 4
D
432 435anti-parallel
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