Analysis of interatomic Contacts of Structural Units in PDB entry:
6NOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NOG entry

There are 11 chains in PDB entry 6NOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PRO 38GLU 133
E
PRO 38GLU 133
B
ASN 25GLY 102
F
VAL 21GLY 102
C
ALA 14PRO 117
G
ALA 14LYS 118
D
THR 32ALA 124
H
THR 32LYS 125
L
MET 1ARG 74
K
LYS 4LYS 330
I
T 2 C 53
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6NOG. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
44 57Right-handed alpha
Helix 2
AA2
A
63 75Right-handed alpha
Helix 3
AA3
A
76 78Right-handed 310
Helix 4
AA4
A
85 114Right-handed alpha
Helix 5
AA5
A
120 132Right-handed alpha
Helix 6
AA6
E
44 55Right-handed alpha
Helix 7
AA7
E
63 79Right-handed alpha
Helix 8
AA8
E
85 113Right-handed alpha
Helix 9
AA9
E
120 132Right-handed alpha
Helix 10
AB1
B
30 42Right-handed alpha
Helix 11
AB2
B
49 76Right-handed alpha
Helix 12
AB3
B
82 92Right-handed alpha
Helix 13
AB4
F
24 29Right-handed 310
Helix 14
AB5
F
30 42Right-handed alpha
Helix 15
AB6
F
50 75Right-handed alpha
Helix 16
AB7
F
82 94Right-handed alpha
Helix 17
AB8
C
16 22Right-handed alpha
Helix 18
AB9
C
26 36Right-handed alpha
Helix 19
AC1
C
46 72Right-handed alpha
Helix 20
AC2
C
79 89Right-handed alpha
Helix 21
AC3
C
90 97Right-handed alpha
Helix 22
AC4
C
112 116Right-handed 310
Helix 23
AC5
G
16 22Right-handed alpha
Helix 24
AC6
G
26 37Right-handed alpha
Helix 25
AC7
G
46 73Right-handed alpha
Helix 26
AC8
G
79 89Right-handed alpha
Helix 27
AC9
G
90 97Right-handed alpha
Helix 28
AD1
G
112 116Right-handed 310
Helix 29
AD2
D
37 46Right-handed alpha
Helix 30
AD3
D
55 83Right-handed alpha
Helix 31
AD4
D
90 102Right-handed alpha
Helix 32
AD5
D
104 122Right-handed alpha
Helix 33
AD6
H
37 46Right-handed alpha
Helix 34
AD7
H
55 83Right-handed alpha
Helix 35
AD8
H
92 102Right-handed alpha
Helix 36
AD9
H
103 122Right-handed alpha
Helix 37
AE1
L
22 35Right-handed alpha
Helix 38
AE2
L
37 39Right-handed 310
Helix 39
AE3
L
55 60Right-handed 310
Helix 40
AE4
K
33 48Right-handed alpha
Helix 41
AE5
K
48 57Right-handed alpha
Helix 42
AE6
K
67 91Right-handed alpha
Helix 43
AE7
K
103 119Right-handed alpha
Helix 44
AE8
K
140 151Right-handed alpha
Helix 45
AE9
K
167 177Right-handed alpha
Helix 46
AF1
K
188 210Right-handed alpha
Helix 47
AF2
K
225 234Right-handed alpha
Helix 48
AF3
K
246 258Right-handed alpha
Helix 49
AF4
K
286 289Right-handed 310
Helix 50
AF5
K
319 329Right-handed alpha
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There are 9 sheets in PDB entry 6NOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
96 97first strand
Strand 2
G
100 101parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
42 43first strand
Strand 2
D
88 89parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
77 78first strand
Strand 2
D
53 54parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
42 43first strand
Strand 2
H
88 89parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
77 78first strand
Strand 2
H
53 54parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
L
12 16first strand
Strand 2
L
2 6anti-parallel
Strand 3
L
66 71parallel
Strand 4
L
41 45anti-parallel
Strand 5
L
48 49anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
6 9first strand
Strand 2
K
18 21anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
26 28first strand
Strand 2
K
31 32anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
K
216 220first strand
Strand 2
K
182 186parallel
Strand 3
K
159 162parallel
Strand 4
K
237 240parallel
Strand 5
K
265 268parallel
Strand 6
K
313 317anti-parallel
Strand 7
K
291 295anti-parallel
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