Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NQJ entry

There are 8 chains in PDB entry 6NQJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	PHE 61
A	ASN 65	TYR 228
B	ALA 2	PHE 61
B	ASN 65	ARG 221
C	ALA 2	PHE 61
C	ASN 65	LEU 227
D	VAL 3	PHE 61
D	ASN 65	PRO 220

There are 7 helices in PDB entry 6NQJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	59	Right-handed alpha
Helix 2	AA2	B	54	59	Right-handed alpha
Helix 3	AA3	B	79	83	Right-handed 310
Helix 4	AA4	C	54	59	Right-handed alpha
Helix 5	AA5	C	77	82	Right-handed alpha
Helix 6	AA6	D	54	59	Right-handed alpha
Helix 7	AA7	D	79	83	Right-handed 310

There are 4 sheets in PDB entry 6NQJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	136	139	first strand
Strand 2	A	152	163	anti-parallel
Strand 3	A	168	179	anti-parallel
Strand 4	A	87	95	anti-parallel
Strand 5	A	100	110	anti-parallel
Strand 6	A	113	123	anti-parallel
Strand 7	A	8	18	parallel
Strand 8	A	21	32	anti-parallel
Strand 9	A	37	46	anti-parallel
Strand 10	A	206	216	anti-parallel
Strand 11	A	189	200	anti-parallel
Strand 12	A	142	149	anti-parallel
Strand 13	A	152	163	anti-parallel

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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	136	139	first strand
Strand 2	B	152	163	anti-parallel
Strand 3	B	168	179	anti-parallel
Strand 4	B	87	95	anti-parallel
Strand 5	B	100	110	anti-parallel
Strand 6	B	113	123	anti-parallel
Strand 7	B	8	18	parallel
Strand 8	B	21	32	anti-parallel
Strand 9	B	37	46	anti-parallel
Strand 10	B	206	216	anti-parallel
Strand 11	B	189	200	anti-parallel
Strand 12	B	142	149	anti-parallel
Strand 13	B	152	163	anti-parallel

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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	139	first strand
Strand 2	C	152	163	anti-parallel
Strand 3	C	168	179	anti-parallel
Strand 4	C	87	95	anti-parallel
Strand 5	C	100	110	anti-parallel
Strand 6	C	113	123	anti-parallel
Strand 7	C	8	18	parallel
Strand 8	C	21	32	anti-parallel
Strand 9	C	37	46	anti-parallel
Strand 10	C	206	216	anti-parallel
Strand 11	C	189	200	anti-parallel
Strand 12	C	142	149	anti-parallel
Strand 13	C	152	163	anti-parallel

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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	136	139	first strand
Strand 2	D	152	163	anti-parallel
Strand 3	D	168	179	anti-parallel
Strand 4	D	87	95	anti-parallel
Strand 5	D	100	110	anti-parallel
Strand 6	D	113	123	anti-parallel
Strand 7	D	8	18	parallel
Strand 8	D	21	32	anti-parallel
Strand 9	D	37	46	anti-parallel
Strand 10	D	206	216	anti-parallel
Strand 11	D	189	200	anti-parallel
Strand 12	D	142	149	anti-parallel
Strand 13	D	152	163	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NQJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NQJ