Analysis of interatomic Contacts of Structural Units in PDB entry:
6NUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NUF entry

There are 3 chains in PDB entry 6NUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 11ASN 370
B
 MET 15VAL 170
C
 ASN 681SER 723
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6NUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 35Right-handed alpha
Helix 2
AA2
A
42 52Right-handed alpha
Helix 3
AA3
A
57 74Right-handed alpha
Helix 4
AA4
A
94 106Right-handed alpha
Helix 5
AA5
A
125 140Right-handed alpha
Helix 6
AA6
A
153 160Right-handed alpha
Helix 7
AA7
A
161 170Right-handed alpha
Helix 8
AA8
A
171 184Right-handed alpha
Helix 9
AA9
A
208 214Right-handed alpha
Helix 10
AB1
A
225 233Right-handed alpha
Helix 11
AB2
A
261 273Right-handed alpha
Helix 12
AB3
A
310 314Right-handed 310
Helix 13
AB4
A
343 347Right-handed 310
Helix 14
AB5
A
348 370Right-handed alpha
Helix 15
AB6
B
16 31Right-handed alpha
Helix 16
AB7
B
39 45Right-handed alpha
Helix 17
AB8
B
46 51Right-handed alpha
Helix 18
AB9
B
54 63Right-handed alpha
Helix 19
AC1
B
72 81Right-handed alpha
Helix 20
AC2
B
87 100Right-handed alpha
Helix 21
AC3
B
108 121Right-handed alpha
Helix 22
AC4
B
122 124Right-handed 310
Helix 23
AC5
B
125 141Right-handed alpha
Helix 24
AC6
B
150 158Right-handed alpha
Helix 25
AC7
B
159 166Right-handed 310
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There are 6 sheets in PDB entry 6NUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
55 56parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
188 191parallel
Strand 3
A
195 197anti-parallel
Strand 4
A
276 279parallel
Strand 5
A
302 305parallel
Strand 6
A
288 290anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 146first strand
Strand 2
A
113 115parallel
Strand 3
A
85 88parallel
Strand 4
A
319 325anti-parallel
Strand 5
A
328 334anti-parallel
Strand 6
C
716 720parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 235first strand
Strand 2
A
258 260parallel
Strand 3
A
248 250anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 38first strand
Strand 2
B
70 71anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
106 107first strand
Strand 2
B
148 149anti-parallel
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