Analysis of interatomic Contacts of Structural Units in PDB entry:
6NYY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6NYY entry

There are 10 chains in PDB entry 6NYY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
PHE 289LYS 753
B
VAL 291TRP 779
C
PHE 289TRP 779
D
PHE 289TRP 779
E
PHE 289THR 763
F
PHE 289SER 754
G
ALA 1ALA 11
H
ALA 1ALA 11
I
ALA 1ALA 9
J
ALA 1ALA 8
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 96 helices in PDB entry 6NYY. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
526 533Right-handed alpha
Helix 2
AA2
A
542 553Right-handed alpha
Helix 3
AA3
A
564 585Right-handed alpha
Helix 4
AA4
A
617 629Right-handed alpha
Helix 5
AA5
A
629 638Right-handed alpha
Helix 6
AA6
A
646 662Right-handed alpha
Helix 7
AA7
A
690 719Right-handed alpha
Helix 8
AA8
A
719 734Right-handed alpha
Helix 9
AA9
A
737 746Right-handed alpha
Helix 10
AB1
B
306 310Right-handed 310
Helix 11
AB2
B
317 329Right-handed alpha
Helix 12
AB3
B
355 365Right-handed alpha
Helix 13
AB4
B
375 377Right-handed 310
Helix 14
AB5
B
384 399Right-handed alpha
Helix 15
AB6
B
409 412Right-handed 310
Helix 16
AB7
B
421 440Right-handed alpha
Helix 17
AB8
B
479 491Right-handed alpha
Helix 18
AB9
B
503 513Right-handed alpha
Helix 19
AC1
B
517 535Right-handed alpha
Helix 20
AC2
B
541 555Right-handed alpha
Helix 21
AC3
B
566 585Right-handed alpha
Helix 22
AC4
B
617 629Right-handed alpha
Helix 23
AC5
B
629 639Right-handed alpha
Helix 24
AC6
B
647 662Right-handed alpha
Helix 25
AC7
B
690 719Right-handed alpha
Helix 26
AC8
B
719 734Right-handed alpha
Helix 27
AC9
B
738 746Right-handed alpha
Helix 28
AD1
B
755 760Right-handed alpha
Helix 29
AD2
C
306 310Right-handed 310
Helix 30
AD3
C
313 329Right-handed alpha
Helix 31
AD4
C
330 335Right-handed alpha
Helix 32
AD5
C
355 365Right-handed alpha
Helix 33
AD6
C
385 399Right-handed alpha
Helix 34
AD7
C
409 412Right-handed 310
Helix 35
AD8
C
421 439Right-handed alpha
Helix 36
AD9
C
455 459Right-handed 310
Helix 37
AE1
C
479 491Right-handed alpha
Helix 38
AE2
C
501 512Right-handed alpha
Helix 39
AE3
C
519 533Right-handed alpha
Helix 40
AE4
C
542 554Right-handed alpha
Helix 41
AE5
C
567 585Right-handed alpha
Helix 42
AE6
C
617 629Right-handed alpha
Helix 43
AE7
C
629 639Right-handed alpha
Helix 44
AE8
C
646 659Right-handed alpha
Helix 45
AE9
C
690 714Right-handed alpha
Helix 46
AF1
C
719 734Right-handed alpha
Helix 47
AF2
C
737 746Right-handed alpha
Helix 48
AF3
C
773 777Right-handed 310
Helix 49
AF4
D
306 310Right-handed 310
Helix 50
AF5
D
313 329Right-handed alpha
Helix 51
AF6
D
329 335Right-handed alpha
Helix 52
AF7
D
355 365Right-handed alpha
Helix 53
AF8
D
375 377Right-handed 310
Helix 54
AF9
D
385 399Right-handed alpha
Helix 55
AG1
D
409 412Right-handed 310
Helix 56
AG2
D
424 439Right-handed alpha
Helix 57
AG3
D
479 491Right-handed alpha
Helix 58
AG4
D
501 513Right-handed alpha
Helix 59
AG5
D
517 535Right-handed alpha
Helix 60
AG6
D
542 555Right-handed alpha
Helix 61
AG7
D
564 585Right-handed alpha
Helix 62
AG8
D
617 629Right-handed alpha
Helix 63
AG9
D
629 638Right-handed alpha
Helix 64
AH1
D
646 662Right-handed alpha
Helix 65
AH2
D
690 714Right-handed alpha
Helix 66
AH3
D
719 733Right-handed alpha
Helix 67
AH4
D
738 746Right-handed alpha
Helix 68
AH5
D
755 761Right-handed alpha
Helix 69
AH6
D
773 777Right-handed 310
Helix 70
AH7
E
306 310Right-handed 310
Helix 71
AH8
E
313 329Right-handed alpha
Helix 72
AH9
E
329 335Right-handed alpha
Helix 73
AI1
E
353 366Right-handed alpha
Helix 74
AI2
E
383 399Right-handed alpha
Helix 75
AI3
E
409 412Right-handed 310
Helix 76
AI4
E
424 439Right-handed alpha
Helix 77
AI5
E
455 459Right-handed 310
Helix 78
AI6
E
479 492Right-handed alpha
Helix 79
AI7
E
501 510Right-handed alpha
Helix 80
AI8
E
517 535Right-handed alpha
Helix 81
AI9
E
541 554Right-handed alpha
Helix 82
AJ1
E
564 585Right-handed alpha
Helix 83
AJ2
E
618 629Right-handed alpha
Helix 84
AJ3
E
629 638Right-handed alpha
Helix 85
AJ4
E
644 646Right-handed 310
Helix 86
AJ5
E
647 662Right-handed alpha
Helix 87
AJ6
E
690 717Right-handed alpha
Helix 88
AJ7
E
719 731Right-handed alpha
Helix 89
AJ8
E
737 746Right-handed alpha
Helix 90
AJ9
F
564 582Right-handed alpha
Helix 91
AK1
F
617 629Right-handed alpha
Helix 92
AK2
F
629 639Right-handed alpha
Helix 93
AK3
F
646 660Right-handed alpha
Helix 94
AK4
F
690 717Right-handed alpha
Helix 95
AK5
F
719 734Right-handed alpha
Helix 96
AK6
F
737 746Right-handed alpha
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There are 9 sheets in PDB entry 6NYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
591 595first strand
Strand 2
A
605 608anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
297 299first strand
Strand 2
B
369 373anti-parallel
Strand 3
B
403 407parallel
Strand 4
B
450 452parallel
Strand 5
B
345 346parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
605 608first strand
Strand 2
B
591 595anti-parallel
Strand 3
B
735 737anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
297 298first strand
Strand 2
C
369 373anti-parallel
Strand 3
C
403 407parallel
Strand 4
C
448 452parallel
Strand 5
C
343 347parallel
Strand 6
C
471 474parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
602 605first strand
Strand 2
I
5 7anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
297 298first strand
Strand 2
D
369 373anti-parallel
Strand 3
D
403 407parallel
Strand 4
D
448 453parallel
Strand 5
D
343 347parallel
Strand 6
D
471 474parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
735 736first strand
Strand 2
D
591 595anti-parallel
Strand 3
D
605 608anti-parallel
Strand 4
J
3 4anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
369 373first strand
Strand 2
E
403 407parallel
Strand 3
E
448 453parallel
Strand 4
E
344 347parallel
Strand 5
E
471 474parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
594 595first strand
Strand 2
F
735 736anti-parallel
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