Analysis of interatomic Contacts of Structural Units in PDB entry:
6NZD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6NZD entry

There are 9 chains in PDB entry 6NZD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 48	VAL 156
B	ALA 0	SER 125
C	ALA 2	GLU 122
D	SER 3	ARG 92
E	MET 83	SER 173
F	VAL 10	LYS 295
G	PRO 62	PHE 367
H	ASN 2	SER 558
I	LEU 44	SER 1106

There are 69 helices in PDB entry 6NZD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	48	65	Right-handed alpha
Helix 2	AA2	A	98	103	Right-handed alpha
Helix 3	AA3	A	114	121	Right-handed alpha
Helix 4	AA4	A	125	143	Right-handed alpha
Helix 5	AA5	A	144	146	Right-handed 310
Helix 6	AA6	B	3	13	Right-handed alpha
Helix 7	AA7	B	41	61	Right-handed alpha
Helix 8	AA8	B	100	123	Right-handed alpha
Helix 9	AA9	C	3	13	Right-handed alpha
Helix 10	AB1	C	14	16	Right-handed 310
Helix 11	AB2	C	41	45	Right-handed 310
Helix 12	AB3	C	46	51	Right-handed alpha
Helix 13	AB4	C	51	61	Right-handed alpha
Helix 14	AB5	C	99	120	Right-handed alpha
Helix 15	AB6	D	4	11	Right-handed alpha
Helix 16	AB7	D	36	53	Right-handed alpha
Helix 17	AB8	E	84	96	Right-handed alpha
Helix 18	AB9	E	120	122	Right-handed 310
Helix 19	AC1	E	123	135	Right-handed alpha
Helix 20	AC2	E	136	138	Right-handed 310
Helix 21	AC3	F	21	28	Right-handed alpha
Helix 22	AC4	F	98	116	Right-handed alpha
Helix 23	AC5	F	133	152	Right-handed alpha
Helix 24	AC6	F	167	181	Right-handed alpha
Helix 25	AC7	F	183	199	Right-handed alpha
Helix 26	AC8	F	228	244	Right-handed alpha
Helix 27	AC9	F	282	295	Right-handed alpha
Helix 28	AD1	G	73	84	Right-handed alpha
Helix 29	AD2	G	88	92	Right-handed 310
Helix 30	AD3	G	129	136	Right-handed alpha
Helix 31	AD4	G	150	166	Right-handed alpha
Helix 32	AD5	G	184	205	Right-handed alpha
Helix 33	AD6	G	223	237	Right-handed alpha
Helix 34	AD7	G	239	254	Right-handed alpha
Helix 35	AD8	G	278	300	Right-handed alpha
Helix 36	AD9	G	343	347	Right-handed alpha
Helix 37	AE1	G	348	367	Right-handed alpha
Helix 38	AE2	H	114	132	Right-handed alpha
Helix 39	AE3	H	178	185	Right-handed alpha
Helix 40	AE4	H	185	209	Right-handed alpha
Helix 41	AE5	H	241	246	Right-handed alpha
Helix 42	AE6	H	249	267	Right-handed alpha
Helix 43	AE7	H	348	357	Right-handed alpha
Helix 44	AE8	H	357	370	Right-handed alpha
Helix 45	AE9	H	380	392	Right-handed alpha
Helix 46	AF1	H	393	395	Right-handed 310
Helix 47	AF2	H	396	400	Right-handed 310
Helix 48	AF3	H	427	432	Right-handed alpha
Helix 49	AF4	H	480	492	Right-handed alpha
Helix 50	AF5	H	496	522	Right-handed alpha
Helix 51	AF6	H	528	539	Right-handed alpha
Helix 52	AF7	H	543	554	Right-handed alpha
Helix 53	AF8	H	555	557	Right-handed 310
Helix 54	AF9	I	134	143	Right-handed alpha
Helix 55	AG1	I	322	336	Right-handed alpha
Helix 56	AG2	I	337	354	Right-handed alpha
Helix 57	AG3	I	370	392	Right-handed alpha
Helix 58	AG4	I	398	404	Right-handed alpha
Helix 59	AG5	I	411	427	Right-handed alpha
Helix 60	AG6	I	433	442	Right-handed alpha
Helix 61	AG7	I	447	453	Right-handed alpha
Helix 62	AG8	I	483	492	Right-handed alpha
Helix 63	AG9	I	513	525	Right-handed alpha
Helix 64	AH1	I	943	947	Right-handed 310
Helix 65	AH2	I	967	984	Right-handed alpha
Helix 66	AH3	I	1030	1043	Right-handed alpha
Helix 67	AH4	I	1047	1076	Right-handed alpha
Helix 68	AH5	I	1081	1087	Right-handed alpha
Helix 69	AH6	I	1094	1106	Right-handed alpha

There are 10 sheets in PDB entry 6NZD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	36	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	89	95	anti-parallel
Strand 4	B	79	86	anti-parallel
Strand 5	B	71	76	anti-parallel
Strand 6	C	68	74	anti-parallel
Strand 7	C	78	85	anti-parallel
Strand 8	C	88	95	anti-parallel
Strand 9	C	19	25	anti-parallel
Strand 10	C	31	36	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	25	31	first strand
Strand 2	D	15	22	anti-parallel
Strand 3	D	83	90	anti-parallel
Strand 4	D	73	80	anti-parallel
Strand 5	D	65	69	anti-parallel
Strand 6	E	146	151	anti-parallel
Strand 7	E	154	161	anti-parallel
Strand 8	E	164	170	anti-parallel
Strand 9	E	100	106	anti-parallel
Strand 10	E	112	117	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	59	60	first strand
Strand 2	F	11	14	parallel
Strand 3	F	88	93	parallel
Strand 4	F	124	127	parallel
Strand 5	F	159	161	parallel

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	213	217	first strand
Strand 2	F	202	207	anti-parallel
Strand 3	F	270	276	anti-parallel
Strand 4	F	260	267	anti-parallel
Strand 5	F	249	255	anti-parallel
Strand 6	G	315	320	anti-parallel
Strand 7	G	324	330	anti-parallel
Strand 8	G	335	342	anti-parallel
Strand 9	G	258	263	anti-parallel
Strand 10	G	269	272	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	66	first strand
Strand 2	G	113	116	parallel
Strand 3	G	100	103	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	145	first strand
Strand 2	G	174	178	parallel
Strand 3	G	214	217	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	20	first strand
Strand 2	H	4	9	anti-parallel
Strand 3	H	170	176	anti-parallel
Strand 4	H	149	156	anti-parallel
Strand 5	H	139	145	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	402	406	first strand
Strand 2	H	417	420	parallel
Strand 3	H	373	377	parallel
Strand 4	H	436	442	parallel
Strand 5	H	464	469	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	53	first strand
Strand 2	I	311	318	anti-parallel
Strand 3	I	165	172	anti-parallel
Strand 4	I	153	160	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	961	962	first strand
Strand 2	I	503	505	parallel
Strand 3	I	996	999	parallel
Strand 4	I	1006	1009	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6NZD

Analysis of interatomic Contacts of Structural Units in PDB entry:
6NZD