Analysis of interatomic Contacts of Structural Units in PDB entry:
6O0U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O0U entry

There are 2 chains in PDB entry 6O0U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 561GLN 700
B
 THR 561GLN 700
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 6O0U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
569 587Right-handed alpha
Helix 2
AA2
A
593 598Right-handed alpha
Helix 3
AA3
A
602 614Right-handed alpha
Helix 4
AA4
A
637 649Right-handed alpha
Helix 5
AA5
A
664 668Right-handed 310
Helix 6
AA6
A
669 678Right-handed 310
Helix 7
AA7
A
687 699Right-handed alpha
Helix 8
AA8
B
569 587Right-handed alpha
Helix 9
AA9
B
593 598Right-handed alpha
Helix 10
AB1
B
602 614Right-handed alpha
Helix 11
AB2
B
626 630Right-handed 310
Helix 12
AB3
B
637 649Right-handed alpha
Helix 13
AB4
B
664 668Right-handed 310
Helix 14
AB5
B
669 678Right-handed 310
Helix 15
AB6
B
687 699Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6O0U. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 592first strand
Strand 2
A
564 568parallel
Strand 3
A
616 621parallel
Strand 4
A
652 657parallel
Strand 5
A
681 682parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 592first strand
Strand 2
B
564 568parallel
Strand 3
B
616 621parallel
Strand 4
B
652 657parallel
Strand 5
B
681 682parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il