Analysis of interatomic Contacts of Structural Units in PDB entry:
6O0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O0V entry

There are 4 chains in PDB entry 6O0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 560GLN 700
B
 PRO 562GLN 700
C
 THR 561GLN 700
D
 PRO 562LEU 699
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6O0V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
569 587Right-handed alpha
Helix 2
AA2
A
608 614Right-handed alpha
Helix 3
AA3
A
626 630Right-handed 310
Helix 4
AA4
A
637 649Right-handed alpha
Helix 5
AA5
A
664 668Right-handed 310
Helix 6
AA6
A
669 678Right-handed 310
Helix 7
AA7
A
687 699Right-handed alpha
Helix 8
AA8
B
569 587Right-handed alpha
Helix 9
AA9
B
609 613Right-handed alpha
Helix 10
AB1
B
626 630Right-handed 310
Helix 11
AB2
B
637 649Right-handed alpha
Helix 12
AB3
B
664 668Right-handed 310
Helix 13
AB4
B
669 678Right-handed 310
Helix 14
AB5
B
687 699Right-handed alpha
Helix 15
AB6
C
573 587Right-handed alpha
Helix 16
AB7
C
594 598Right-handed 310
Helix 17
AB8
C
603 614Right-handed alpha
Helix 18
AB9
C
626 630Right-handed 310
Helix 19
AC1
C
637 650Right-handed alpha
Helix 20
AC2
C
664 668Right-handed 310
Helix 21
AC3
C
669 678Right-handed 310
Helix 22
AC4
C
687 699Right-handed alpha
Helix 23
AC5
D
573 587Right-handed alpha
Helix 24
AC6
D
608 614Right-handed alpha
Helix 25
AC7
D
637 649Right-handed alpha
Helix 26
AC8
D
664 668Right-handed 310
Helix 27
AC9
D
669 678Right-handed 310
Helix 28
AD1
D
687 699Right-handed alpha
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There are 4 sheets in PDB entry 6O0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
591 593first strand
Strand 2
A
564 567parallel
Strand 3
A
617 621parallel
Strand 4
A
653 657parallel
Strand 5
A
681 682parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
591 593first strand
Strand 2
B
564 567parallel
Strand 3
B
616 621parallel
Strand 4
B
652 657parallel
Strand 5
B
681 682parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
564 567first strand
Strand 2
C
616 621parallel
Strand 3
C
652 657parallel
Strand 4
C
681 682parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
591 592first strand
Strand 2
D
564 567parallel
Strand 3
D
616 621parallel
Strand 4
D
652 657parallel
Strand 5
D
681 682parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il