Analysis of interatomic Contacts of Structural Units in PDB entry:
6O3O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O3O entry

There are 4 chains in PDB entry 6O3O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 19ALA 241
B
LEU 22LEU 238
C
GLU 27VAL 327
D
ASP 28VAL 329
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6O3O. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
99 103Right-handed 310
Helix 2
AA2
A
213 217Right-handed 310
Helix 3
AA3
B
74 77Right-handed 310
Helix 4
AA4
C
114 118Right-handed 310
Helix 5
AA5
D
114 118Right-handed 310
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There are 22 sheets in PDB entry 6O3O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
68 71first strand
Strand 2
A
59 64anti-parallel
Strand 3
A
44 52anti-parallel
Strand 4
A
105 113anti-parallel
Strand 5
A
116 125anti-parallel
Strand 6
A
25 28parallel
Strand 7
A
173 180anti-parallel
Strand 8
A
160 168anti-parallel
Strand 9
A
218 226anti-parallel
Strand 10
A
231 240anti-parallel
Strand 11
A
138 142parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
34 35first strand
Strand 2
A
93 95anti-parallel
Strand 3
A
79 80anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
148 151first strand
Strand 2
A
206 209anti-parallel
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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
68 71first strand
Strand 2
B
59 64anti-parallel
Strand 3
B
44 52anti-parallel
Strand 4
B
105 113anti-parallel
Strand 5
B
116 125anti-parallel
Strand 6
B
25 28parallel
Strand 7
B
173 180anti-parallel
Strand 8
B
162 168anti-parallel
Strand 9
B
219 225anti-parallel
Strand 10
B
231 237anti-parallel
Strand 11
B
138 139parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
34 35first strand
Strand 2
B
93 95anti-parallel
Strand 3
B
79 80anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
148 151first strand
Strand 2
B
206 209anti-parallel
Strand 3
B
196 197anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
30 32first strand
Strand 2
C
50 52anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
36 40first strand
Strand 2
C
133 142parallel
Strand 3
C
119 128anti-parallel
Strand 4
C
60 68anti-parallel
Strand 5
C
74 79anti-parallel
Strand 6
C
83 86anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
45 47first strand
Strand 2
C
108 110anti-parallel
Strand 3
C
92 94anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
146 151first strand
Strand 2
C
161 171anti-parallel
Strand 3
C
200 208anti-parallel
Strand 4
C
186 193anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
154 155first strand
Strand 2
C
240 241parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
176 180first strand
Strand 2
C
218 224anti-parallel
Strand 3
C
232 237anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
245 249first strand
Strand 2
C
262 269anti-parallel
Strand 3
C
296 299anti-parallel
Strand 4
C
290 293anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
276 281first strand
Strand 2
C
310 315anti-parallel
Strand 3
C
320 321anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
276 281first strand
Strand 2
C
310 315anti-parallel
Strand 3
C
324 325anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
30 32first strand
Strand 2
D
50 52anti-parallel
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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
36 40first strand
Strand 2
D
131 142parallel
Strand 3
D
119 128anti-parallel
Strand 4
D
60 68anti-parallel
Strand 5
D
76 79anti-parallel
Strand 6
D
83 86anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
45 47first strand
Strand 2
D
108 110anti-parallel
Strand 3
D
92 94anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
146 151first strand
Strand 2
D
161 171anti-parallel
Strand 3
D
200 208anti-parallel
Strand 4
D
186 193anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
154 155first strand
Strand 2
D
240 249parallel
Strand 3
D
262 271anti-parallel
Strand 4
D
296 299anti-parallel
Strand 5
D
290 293anti-parallel
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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
176 180first strand
Strand 2
D
218 224anti-parallel
Strand 3
D
232 237anti-parallel
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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
276 281first strand
Strand 2
D
307 316anti-parallel
Strand 3
D
319 328anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il