Analysis of interatomic Contacts of Structural Units in PDB entry:
6O8Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6O8Q entry

There are 12 chains in PDB entry 6O8Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLY 0LYS 90
B
GLY 0LYS 90
C
GLY 0LYS 90
D
GLY 0LYS 90
E
GLY 0LYS 90
F
GLY 0LYS 90
G
GLY 0LYS 90
H
GLY 0LYS 90
I
GLY 0LYS 90
J
GLY 0LYS 90
K
A 1 T 57
L
A 1 C 57
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6O8Q. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
2 15Right-handed alpha
Helix 2
AA2
A
17 38Right-handed alpha
Helix 3
AA3
A
82 90Right-handed alpha
Helix 4
AA4
B
2 15Right-handed alpha
Helix 5
AA5
B
19 39Right-handed alpha
Helix 6
AA6
B
82 90Right-handed alpha
Helix 7
AA7
C
3 15Right-handed alpha
Helix 8
AA8
C
17 38Right-handed alpha
Helix 9
AA9
C
82 89Right-handed alpha
Helix 10
AB1
D
2 14Right-handed alpha
Helix 11
AB2
D
17 39Right-handed alpha
Helix 12
AB3
D
82 90Right-handed alpha
Helix 13
AB4
E
2 15Right-handed alpha
Helix 14
AB5
E
17 39Right-handed alpha
Helix 15
AB6
E
82 90Right-handed alpha
Helix 16
AB7
F
2 15Right-handed alpha
Helix 17
AB8
F
17 39Right-handed alpha
Helix 18
AB9
F
82 90Right-handed alpha
Helix 19
AC1
G
2 15Right-handed alpha
Helix 20
AC2
G
17 38Right-handed alpha
Helix 21
AC3
G
82 89Right-handed alpha
Helix 22
AC4
H
2 15Right-handed alpha
Helix 23
AC5
H
17 39Right-handed alpha
Helix 24
AC6
H
82 90Right-handed alpha
Helix 25
AC7
I
2 15Right-handed alpha
Helix 26
AC8
I
17 38Right-handed alpha
Helix 27
AC9
I
82 90Right-handed alpha
Helix 28
AD1
J
2 14Right-handed alpha
Helix 29
AD2
J
17 39Right-handed alpha
Helix 30
AD3
J
82 89Right-handed alpha
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There are 15 sheets in PDB entry 6O8Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
42 44first strand
Strand 2
A
48 53anti-parallel
Strand 3
A
76 81anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
42 44first strand
Strand 2
B
48 55anti-parallel
Strand 3
B
74 81anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
59 62first strand
Strand 2
B
67 70anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1 2first strand
Strand 2
D
42 44parallel
Strand 3
D
48 54anti-parallel
Strand 4
D
75 81anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
42 44first strand
Strand 2
C
48 55anti-parallel
Strand 3
C
74 81anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
42 44first strand
Strand 2
E
48 53anti-parallel
Strand 3
E
76 81anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
42 44first strand
Strand 2
F
48 51anti-parallel
Strand 3
F
78 81anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
59 60first strand
Strand 2
F
69 70anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
42 44first strand
Strand 2
G
48 54anti-parallel
Strand 3
G
75 81anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
58 61first strand
Strand 2
G
68 71anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
42 44first strand
Strand 2
H
48 55anti-parallel
Strand 3
H
74 81anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
H
59 61first strand
Strand 2
H
68 70anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
I
42 44first strand
Strand 2
I
48 54anti-parallel
Strand 3
I
75 81anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
42 44first strand
Strand 2
J
48 54anti-parallel
Strand 3
J
75 81anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
J
59 61first strand
Strand 2
J
68 70anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il