Analysis of interatomic
Contacts of Structural
Units in PDB entry:
Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A.,
Prilusky J., Abola E.E. and Edelman M. (1999) Automated
analysis of interatomic contacts in proteins.
Bioinformatics, 15, 327-332).
This page provides analyses of
contacts formed by:
For analysis of ligand-protein contacts, use:
3D structure can be seen in additional window with
STING software for 6OD5 entry
There are 15 chains in PDB entry 6OD5
(CSU analysis of residue contacts immediately below table)
| Chain ID |
Initial residue | Terminal residue |
|---|
A
|
HIS 567 | ARG 628 |
B
|
MET 568 | GLU 627 |
X
|
A 1 | A 1 |
X
|
G 3 | G 9 |
X
|
G 11 | T 12 |
Y
|
A 1 | A 1 |
Y
|
G 3 | G 9 |
Y
|
G 11 | T 12 |
C
|
ARG 569 | GLU 627 |
D
|
HIS 567 | ARG 628 |
E
|
G 3 | G 9 |
E
|
G 11 | T 12 |
F
|
A 1 | A 1 |
F
|
G 3 | G 9 |
F
|
G 11 | T 12 |
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There are 8
helices in PDB entry 6OD5. Click on helix of interest for
CSU analysis.
Helix
number
| Helix
ID | Chain
ID |
Initial
residue | Terminal
residue |
Helix class |
|---|
| Helix 1 |
AA1 | A
| 567 |
600 | Right-handed alpha |
| Helix 2 |
AA2 | A
| 606 |
627 | Right-handed alpha |
| Helix 3 |
AA3 | B
| 569 |
599 | Right-handed alpha |
| Helix 4 |
AA4 | B
| 606 |
624 | Right-handed alpha |
| Helix 5 |
AA5 | C
| 570 |
599 | Right-handed alpha |
| Helix 6 |
AA6 | C
| 606 |
624 | Right-handed alpha |
| Helix 7 |
AA7 | D
| 568 |
600 | Right-handed alpha |
| Helix 8 |
AA8 | D
| 606 |
627 | Right-handed alpha |
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There are no sheets in PDB entry
6OD5
Please mail
questions/suggestions concerning this page
to
Vladimir.Sobolev@weizmann.
ac.il