Analysis of interatomic Contacts of Structural Units in PDB entry:
6OM2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6OM2 entry

There are 2 chains in PDB entry 6OM2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 1	GLY 598
B	ILE 72	SER 155

There are 42 helices in PDB entry 6OM2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	175	180	Right-handed alpha
Helix 2	AA2	A	188	194	Right-handed alpha
Helix 3	AA3	A	214	218	Right-handed 310
Helix 4	AA4	A	246	250	Right-handed 310
Helix 5	AA5	A	366	370	Right-handed 310
Helix 6	AA6	A	545	549	Right-handed 310
Helix 7	AA7	B	114	116	Right-handed 310
Helix 8	AA8	B	117	125	Right-handed alpha
Helix 9	AA9	B	130	140	Right-handed alpha
Helix 10	AB1	B	161	166	Right-handed alpha
Helix 11	AB2	B	169	173	Right-handed 310
Helix 12	AB3	B	191	201	Right-handed alpha
Helix 13	AB4	B	213	224	Right-handed alpha
Helix 14	AB5	B	224	229	Right-handed alpha
Helix 15	AB6	B	248	256	Right-handed 310
Helix 16	AB7	B	273	277	Right-handed 310
Helix 17	AB8	B	282	293	Right-handed alpha
Helix 18	AB9	B	305	311	Right-handed alpha
Helix 19	AC1	B	312	316	Right-handed 310
Helix 20	AC2	B	330	345	Right-handed alpha
Helix 21	AC3	C	175	180	Right-handed alpha
Helix 22	AC4	C	187	194	Right-handed alpha
Helix 23	AC5	C	214	218	Right-handed 310
Helix 24	AC6	C	366	370	Right-handed 310
Helix 25	AC7	C	428	430	Right-handed 310
Helix 26	AC8	C	545	549	Right-handed 310
Helix 27	AC9	C	565	570	Right-handed alpha
Helix 28	AD1	D	114	116	Right-handed 310
Helix 29	AD2	D	117	125	Right-handed alpha
Helix 30	AD3	D	126	136	Right-handed alpha
Helix 31	AD4	D	161	166	Right-handed alpha
Helix 32	AD5	D	169	173	Right-handed 310
Helix 33	AD6	D	191	201	Right-handed alpha
Helix 34	AD7	D	213	224	Right-handed alpha
Helix 35	AD8	D	224	229	Right-handed alpha
Helix 36	AD9	D	248	256	Right-handed 310
Helix 37	AE1	D	273	277	Right-handed 310
Helix 38	AE2	D	282	293	Right-handed alpha
Helix 39	AE3	D	305	311	Right-handed alpha
Helix 40	AE4	D	312	316	Right-handed 310
Helix 41	AE5	D	330	345	Right-handed alpha
Helix 42	AE6	D	374	376	Right-handed 310

There are 33 sheets in PDB entry 6OM2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	12	first strand
Strand 2	A	432	436	anti-parallel
Strand 3	A	422	427	anti-parallel
Strand 4	A	408	413	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	26	first strand
Strand 2	A	35	40	anti-parallel
Strand 3	A	55	59	anti-parallel
Strand 4	A	67	69	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	81	first strand
Strand 2	A	84	85	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	113	114	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	101	first strand
Strand 2	A	104	109	anti-parallel
Strand 3	A	127	132	anti-parallel
Strand 4	A	135	139	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	168	173	anti-parallel
Strand 3	A	182	187	anti-parallel
Strand 4	A	207	209	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	229	first strand
Strand 2	A	238	243	anti-parallel
Strand 3	A	252	256	anti-parallel
Strand 4	A	263	268	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	283	first strand
Strand 2	A	292	297	anti-parallel
Strand 3	A	314	320	anti-parallel
Strand 4	A	326	332	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	303	first strand
Strand 2	A	309	311	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	382	383	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	348	first strand
Strand 2	A	357	362	anti-parallel
Strand 3	A	372	379	anti-parallel
Strand 4	A	389	392	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	514	first strand
Strand 2	A	535	543	anti-parallel
Strand 3	A	473	485	anti-parallel
Strand 4	A	441	451	anti-parallel
Strand 5	A	578	579	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	586	593	parallel
Strand 3	A	556	564	anti-parallel
Strand 4	A	491	500	anti-parallel
Strand 5	A	521	524	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	454	455	first strand
Strand 2	A	586	593	parallel
Strand 3	A	556	564	anti-parallel
Strand 4	A	491	500	anti-parallel
Strand 5	A	527	529	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	93	97	anti-parallel
Strand 3	B	388	392	anti-parallel
Strand 4	B	359	363	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	189	first strand
Strand 2	B	142	149	anti-parallel
Strand 3	B	105	112	parallel
Strand 4	B	235	241	parallel
Strand 5	B	295	301	parallel
Strand 6	B	320	323	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	348	349	first strand
Strand 2	B	409	410	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	9	12	first strand
Strand 2	C	432	436	anti-parallel
Strand 3	C	422	427	anti-parallel
Strand 4	C	408	413	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	26	first strand
Strand 2	C	35	40	anti-parallel
Strand 3	C	55	60	anti-parallel
Strand 4	C	67	69	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	84	85	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	113	114	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	101	first strand
Strand 2	C	104	109	anti-parallel
Strand 3	C	127	132	anti-parallel
Strand 4	C	135	139	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	169	172	anti-parallel
Strand 3	C	183	185	anti-parallel
Strand 4	C	208	209	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	229	first strand
Strand 2	C	238	243	anti-parallel
Strand 3	C	252	256	anti-parallel
Strand 4	C	263	268	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	280	283	first strand
Strand 2	C	292	297	anti-parallel
Strand 3	C	314	320	anti-parallel
Strand 4	C	326	332	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	348	first strand
Strand 2	C	357	362	anti-parallel
Strand 3	C	372	376	anti-parallel
Strand 4	C	389	392	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	379	first strand
Strand 2	C	382	383	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	512	514	first strand
Strand 2	C	535	543	anti-parallel
Strand 3	C	473	484	anti-parallel
Strand 4	C	441	451	anti-parallel
Strand 5	C	578	579	parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	454	455	first strand
Strand 2	C	587	593	parallel
Strand 3	C	556	564	anti-parallel
Strand 4	C	491	500	anti-parallel
Strand 5	C	521	529	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	76	77	first strand
Strand 2	D	96	97	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	92	93	first strand
Strand 2	D	390	391	anti-parallel
Strand 3	D	360	364	anti-parallel
Strand 4	D	370	372	anti-parallel

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There are 6 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	183	189	first strand
Strand 2	D	142	149	anti-parallel
Strand 3	D	105	112	parallel
Strand 4	D	235	242	parallel
Strand 5	D	295	301	parallel
Strand 6	D	319	323	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	348	349	first strand
Strand 2	D	406	410	anti-parallel
Strand 3	D	417	419	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6OM2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6OM2