Analysis of interatomic Contacts of Structural Units in PDB entry:
6P5C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P5C entry

There are 3 chains in PDB entry 6P5C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 C 21 C 29
C
 G 6 G 14
A
 MET 296LYS 876
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6P5C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
308 313Right-handed 310
Helix 2
AA2
A
347 352Right-handed alpha
Helix 3
AA3
A
354 363Right-handed alpha
Helix 4
AA4
A
372 382Right-handed alpha
Helix 5
AA5
A
394 402Right-handed alpha
Helix 6
AA6
A
403 406Right-handed 310
Helix 7
AA7
A
409 416Right-handed alpha
Helix 8
AA8
A
424 430Right-handed alpha
Helix 9
AA9
A
439 468Right-handed alpha
Helix 10
AB1
A
470 477Right-handed alpha
Helix 11
AB2
A
477 492Right-handed alpha
Helix 12
AB3
A
496 522Right-handed alpha
Helix 13
AB4
A
530 540Right-handed alpha
Helix 14
AB5
A
557 565Right-handed alpha
Helix 15
AB6
A
566 568Right-handed 310
Helix 16
AB7
A
569 587Right-handed alpha
Helix 17
AB8
A
587 595Right-handed alpha
Helix 18
AB9
A
630 635Right-handed alpha
Helix 19
AC1
A
636 638Right-handed 310
Helix 20
AC2
A
656 667Right-handed alpha
Helix 21
AC3
A
668 677Right-handed alpha
Helix 22
AC4
A
680 691Right-handed alpha
Helix 23
AC5
A
693 697Right-handed 310
Helix 24
AC6
A
698 714Right-handed alpha
Helix 25
AC7
A
717 726Right-handed alpha
Helix 26
AC8
A
728 743Right-handed alpha
Helix 27
AC9
A
743 761Right-handed alpha
Helix 28
AD1
A
774 778Right-handed 310
Helix 29
AD2
A
780 818Right-handed alpha
Helix 30
AD3
A
840 855Right-handed alpha
Helix 31
AD4
A
871 875Right-handed 310
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There are 5 sheets in PDB entry 6P5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 304first strand
Strand 2
A
342 346parallel
Strand 3
A
334 339anti-parallel
Strand 4
A
315 321anti-parallel
Strand 5
A
367 370parallel
Strand 6
A
390 393parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
601 602first strand
Strand 2
A
493 495anti-parallel
Strand 3
A
640 641anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 607first strand
Strand 2
A
617 619anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
823 827first strand
Strand 2
A
831 837anti-parallel
Strand 3
A
647 654anti-parallel
Strand 4
A
864 869anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
762 764first strand
Strand 2
A
770 772anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il