Analysis of interatomic Contacts of Structural Units in PDB entry:
6P8E


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6P8E entry

There are 3 chains in PDB entry 6P8E (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 19ASN 265
B
GLY 18GLU 296
C
PHE 24GLU 80
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6P8E. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
19 35Right-handed alpha
Helix 2
AA2
A
43 48Right-handed alpha
Helix 3
AA3
A
53 71Right-handed alpha
Helix 4
AA4
A
76 90Right-handed alpha
Helix 5
AA5
A
95 97Right-handed 310
Helix 6
AA6
A
98 115Right-handed alpha
Helix 7
AA7
A
120 128Right-handed alpha
Helix 8
AA8
A
133 148Right-handed alpha
Helix 9
AA9
A
156 167Right-handed alpha
Helix 10
AB1
A
171 191Right-handed alpha
Helix 11
AB2
A
193 198Right-handed alpha
Helix 12
AB3
A
199 212Right-handed alpha
Helix 13
AB4
A
213 217Right-handed 310
Helix 14
AB5
A
225 238Right-handed alpha
Helix 15
AB6
A
240 265Right-handed alpha
Helix 16
AB7
B
47 64Right-handed alpha
Helix 17
AB8
B
96 103Right-handed alpha
Helix 18
AB9
B
110 131Right-handed alpha
Helix 19
AC1
B
179 184Right-handed alpha
Helix 20
AC2
B
190 207Right-handed alpha
Helix 21
AC3
B
215 228Right-handed alpha
Helix 22
AC4
B
231 235Right-handed 310
Helix 23
AC5
B
242 246Right-handed 310
Helix 24
AC6
B
253 257Right-handed 310
Helix 25
AC7
B
262 273Right-handed alpha
Helix 26
AC8
B
282 288Right-handed alpha
Helix 27
AC9
B
289 293Right-handed 310
Helix 28
AD1
C
37 61Right-handed alpha
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There are 3 sheets in PDB entry 6P8E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
71 77first strand
Strand 2
B
84 92anti-parallel
Strand 3
B
31 39anti-parallel
Strand 4
B
21 24anti-parallel
Strand 5
C
77 78anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
143 145first strand
Strand 2
B
151 153anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
62 63first strand
Strand 2
C
68 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il