Analysis of interatomic Contacts of Structural Units in PDB entry:
6PBD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PBD entry

There are 4 chains in PDB entry 6PBD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 357
B
 PHE 3GLY 356
X
 C 1 G 19
Y
 G 1 C 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 6PBD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 20Right-handed alpha
Helix 2
AA2
A
55 59Right-handed 310
Helix 3
AA3
A
62 80Right-handed alpha
Helix 4
AA4
A
95 106Right-handed alpha
Helix 5
AA5
A
175 179Right-handed 310
Helix 6
AA6
A
194 206Right-handed alpha
Helix 7
AA7
A
220 229Right-handed alpha
Helix 8
AA8
A
239 252Right-handed alpha
Helix 9
AA9
A
274 281Right-handed alpha
Helix 10
AB1
A
315 323Right-handed alpha
Helix 11
AB2
A
330 335Right-handed alpha
Helix 12
AB3
A
346 357Right-handed alpha
Helix 13
AB4
B
12 20Right-handed alpha
Helix 14
AB5
B
63 80Right-handed alpha
Helix 15
AB6
B
95 106Right-handed alpha
Helix 16
AB7
B
152 160Right-handed alpha
Helix 17
AB8
B
175 179Right-handed 310
Helix 18
AB9
B
182 186Right-handed 310
Helix 19
AC1
B
194 206Right-handed alpha
Helix 20
AC2
B
220 229Right-handed alpha
Helix 21
AC3
B
239 252Right-handed alpha
Helix 22
AC4
B
257 261Right-handed 310
Helix 23
AC5
B
266 270Right-handed 310
Helix 24
AC6
B
274 282Right-handed alpha
Helix 25
AC7
B
315 323Right-handed alpha
Helix 26
AC8
B
330 335Right-handed alpha
Helix 27
AC9
B
346 356Right-handed alpha
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There are 5 sheets in PDB entry 6PBD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 10first strand
Strand 2
A
232 237parallel
Strand 3
A
211 214parallel
Strand 4
A
25 30parallel
Strand 5
A
81 91parallel
Strand 6
A
134 141anti-parallel
Strand 7
A
109 118anti-parallel
Strand 8
A
168 171parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
312 314first strand
Strand 2
A
307 309anti-parallel
Strand 3
A
298 301anti-parallel
Strand 4
A
289 291anti-parallel
Strand 5
A
336 338anti-parallel
Strand 6
A
343 345anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 10first strand
Strand 2
B
232 237parallel
Strand 3
B
211 214parallel
Strand 4
B
25 30parallel
Strand 5
B
81 91parallel
Strand 6
B
134 141anti-parallel
Strand 7
B
109 118anti-parallel
Strand 8
B
168 171parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
289 291first strand
Strand 2
B
298 301anti-parallel
Strand 3
B
307 309anti-parallel
Strand 4
B
312 314anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 338first strand
Strand 2
B
343 345anti-parallel
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