Analysis of interatomic Contacts of Structural Units in PDB entry:
6PM1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PM1 entry

There are 5 chains in PDB entry 6PM1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 23	ILE 428
B	PRO 23	ILE 428
C	PRO 23	ILE 428
D	PRO 23	ILE 428
E	PRO 23	ILE 428

There are 65 helices in PDB entry 6PM1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	34	Right-handed alpha
Helix 2	AA2	A	36	40	Right-handed 310
Helix 3	AA3	A	87	90	Right-handed 310
Helix 4	AA4	A	102	109	Right-handed 310
Helix 5	AA5	A	160	163	Right-handed 310
Helix 6	AA6	A	238	243	Right-handed alpha
Helix 7	AA7	A	243	256	Right-handed alpha
Helix 8	AA8	A	264	285	Right-handed alpha
Helix 9	AA9	A	286	288	Right-handed 310
Helix 10	AB1	A	299	322	Right-handed alpha
Helix 11	AB2	A	390	406	Right-handed alpha
Helix 12	AB3	A	409	423	Right-handed alpha
Helix 13	AB4	A	423	428	Right-handed alpha
Helix 14	AB5	B	25	34	Right-handed alpha
Helix 15	AB6	B	36	40	Right-handed 310
Helix 16	AB7	B	87	90	Right-handed 310
Helix 17	AB8	B	102	109	Right-handed 310
Helix 18	AB9	B	160	163	Right-handed 310
Helix 19	AC1	B	238	243	Right-handed alpha
Helix 20	AC2	B	243	256	Right-handed alpha
Helix 21	AC3	B	264	285	Right-handed alpha
Helix 22	AC4	B	286	288	Right-handed 310
Helix 23	AC5	B	299	322	Right-handed alpha
Helix 24	AC6	B	390	406	Right-handed alpha
Helix 25	AC7	B	409	423	Right-handed alpha
Helix 26	AC8	B	423	428	Right-handed alpha
Helix 27	AC9	C	25	34	Right-handed alpha
Helix 28	AD1	C	36	40	Right-handed 310
Helix 29	AD2	C	87	90	Right-handed 310
Helix 30	AD3	C	102	109	Right-handed 310
Helix 31	AD4	C	160	163	Right-handed 310
Helix 32	AD5	C	238	243	Right-handed alpha
Helix 33	AD6	C	243	256	Right-handed alpha
Helix 34	AD7	C	264	285	Right-handed alpha
Helix 35	AD8	C	286	288	Right-handed 310
Helix 36	AD9	C	299	322	Right-handed alpha
Helix 37	AE1	C	390	406	Right-handed alpha
Helix 38	AE2	C	409	423	Right-handed alpha
Helix 39	AE3	C	423	428	Right-handed alpha
Helix 40	AE4	D	25	34	Right-handed alpha
Helix 41	AE5	D	36	40	Right-handed 310
Helix 42	AE6	D	87	90	Right-handed 310
Helix 43	AE7	D	102	109	Right-handed 310
Helix 44	AE8	D	160	163	Right-handed 310
Helix 45	AE9	D	238	243	Right-handed alpha
Helix 46	AF1	D	243	256	Right-handed alpha
Helix 47	AF2	D	264	285	Right-handed alpha
Helix 48	AF3	D	286	288	Right-handed 310
Helix 49	AF4	D	299	322	Right-handed alpha
Helix 50	AF5	D	390	406	Right-handed alpha
Helix 51	AF6	D	409	423	Right-handed alpha
Helix 52	AF7	D	423	428	Right-handed alpha
Helix 53	AF8	E	25	34	Right-handed alpha
Helix 54	AF9	E	36	40	Right-handed 310
Helix 55	AG1	E	87	90	Right-handed 310
Helix 56	AG2	E	102	109	Right-handed 310
Helix 57	AG3	E	160	163	Right-handed 310
Helix 58	AG4	E	238	243	Right-handed alpha
Helix 59	AG5	E	243	256	Right-handed alpha
Helix 60	AG6	E	264	285	Right-handed alpha
Helix 61	AG7	E	286	288	Right-handed 310
Helix 62	AG8	E	299	322	Right-handed alpha
Helix 63	AG9	E	390	406	Right-handed alpha
Helix 64	AH1	E	409	423	Right-handed alpha
Helix 65	AH2	E	423	428	Right-handed alpha

There are 25 sheets in PDB entry 6PM1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	98	100	first strand
Strand 2	A	132	137	anti-parallel
Strand 3	A	141	153	anti-parallel
Strand 4	A	73	85	anti-parallel
Strand 5	A	53	68	anti-parallel
Strand 6	A	182	186	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	123	first strand
Strand 2	A	141	153	anti-parallel
Strand 3	A	73	85	anti-parallel
Strand 4	A	53	68	anti-parallel
Strand 5	A	192	194	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	165	174	anti-parallel
Strand 3	A	225	234	anti-parallel
Strand 4	A	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	116	first strand
Strand 2	A	165	174	anti-parallel
Strand 3	A	225	234	anti-parallel
Strand 4	A	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	217	first strand
Strand 2	A	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	100	first strand
Strand 2	B	132	137	anti-parallel
Strand 3	B	141	153	anti-parallel
Strand 4	B	73	85	anti-parallel
Strand 5	B	53	68	anti-parallel
Strand 6	B	182	186	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	122	123	first strand
Strand 2	B	141	153	anti-parallel
Strand 3	B	73	85	anti-parallel
Strand 4	B	53	68	anti-parallel
Strand 5	B	192	194	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	165	174	anti-parallel
Strand 3	B	225	234	anti-parallel
Strand 4	B	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	116	first strand
Strand 2	B	165	174	anti-parallel
Strand 3	B	225	234	anti-parallel
Strand 4	B	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	217	first strand
Strand 2	B	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	98	100	first strand
Strand 2	C	132	137	anti-parallel
Strand 3	C	141	153	anti-parallel
Strand 4	C	73	85	anti-parallel
Strand 5	C	53	68	anti-parallel
Strand 6	C	182	186	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	123	first strand
Strand 2	C	141	153	anti-parallel
Strand 3	C	73	85	anti-parallel
Strand 4	C	53	68	anti-parallel
Strand 5	C	192	194	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	165	174	anti-parallel
Strand 3	C	225	234	anti-parallel
Strand 4	C	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	116	first strand
Strand 2	C	165	174	anti-parallel
Strand 3	C	225	234	anti-parallel
Strand 4	C	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	217	first strand
Strand 2	C	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	98	100	first strand
Strand 2	D	132	137	anti-parallel
Strand 3	D	141	153	anti-parallel
Strand 4	D	73	85	anti-parallel
Strand 5	D	53	68	anti-parallel
Strand 6	D	182	186	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	123	first strand
Strand 2	D	141	153	anti-parallel
Strand 3	D	73	85	anti-parallel
Strand 4	D	53	68	anti-parallel
Strand 5	D	192	194	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	165	174	anti-parallel
Strand 3	D	225	234	anti-parallel
Strand 4	D	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	116	first strand
Strand 2	D	165	174	anti-parallel
Strand 3	D	225	234	anti-parallel
Strand 4	D	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	217	first strand
Strand 2	D	222	223	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	98	100	first strand
Strand 2	E	132	137	anti-parallel
Strand 3	E	141	153	anti-parallel
Strand 4	E	73	85	anti-parallel
Strand 5	E	53	68	anti-parallel
Strand 6	E	182	186	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	123	first strand
Strand 2	E	141	153	anti-parallel
Strand 3	E	73	85	anti-parallel
Strand 4	E	53	68	anti-parallel
Strand 5	E	192	194	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	165	174	anti-parallel
Strand 3	E	225	234	anti-parallel
Strand 4	E	203	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	116	first strand
Strand 2	E	165	174	anti-parallel
Strand 3	E	225	234	anti-parallel
Strand 4	E	211	213	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	216	217	first strand
Strand 2	E	222	223	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PM1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PM1