Analysis of interatomic Contacts of Structural Units in PDB entry:
6PP5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6PP5 entry

There are 7 chains in PDB entry 6PP5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 63	GLY 414
B	ALA 63	GLY 414
C	ALA 63	GLY 414
D	SER 62	GLY 414
E	SER 62	TYR 413
F	LEU 64	TYR 413
S	UNK 1	UNK 12

There are106 helices in PDB entry 6PP5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	66	78	Right-handed alpha
Helix 2	AA2	A	81	101	Right-handed alpha
Helix 3	AA3	A	124	136	Right-handed alpha
Helix 4	AA4	A	158	170	Right-handed alpha
Helix 5	AA5	A	172	177	Right-handed alpha
Helix 6	AA6	A	185	190	Right-handed 310
Helix 7	AA7	A	204	216	Right-handed alpha
Helix 8	AA8	A	253	264	Right-handed alpha
Helix 9	AA9	A	291	299	Right-handed alpha
Helix 10	AB1	A	301	307	Right-handed alpha
Helix 11	AB2	A	318	328	Right-handed alpha
Helix 12	AB3	A	332	343	Right-handed alpha
Helix 13	AB4	A	351	366	Right-handed alpha
Helix 14	AB5	A	368	371	Right-handed 310
Helix 15	AB6	A	372	380	Right-handed alpha
Helix 16	AB7	A	380	387	Right-handed alpha
Helix 17	AB8	A	399	405	Right-handed alpha
Helix 18	AB9	B	66	78	Right-handed alpha
Helix 19	AC1	B	81	101	Right-handed alpha
Helix 20	AC2	B	124	136	Right-handed alpha
Helix 21	AC3	B	159	170	Right-handed alpha
Helix 22	AC4	B	172	177	Right-handed alpha
Helix 23	AC5	B	186	190	Right-handed 310
Helix 24	AC6	B	204	217	Right-handed alpha
Helix 25	AC7	B	223	227	Right-handed 310
Helix 26	AC8	B	253	264	Right-handed alpha
Helix 27	AC9	B	282	288	Right-handed alpha
Helix 28	AD1	B	291	299	Right-handed alpha
Helix 29	AD2	B	301	307	Right-handed alpha
Helix 30	AD3	B	318	328	Right-handed alpha
Helix 31	AD4	B	332	343	Right-handed alpha
Helix 32	AD5	B	351	366	Right-handed alpha
Helix 33	AD6	B	368	371	Right-handed 310
Helix 34	AD7	B	372	387	Right-handed alpha
Helix 35	AD8	B	399	405	Right-handed alpha
Helix 36	AD9	C	66	78	Right-handed alpha
Helix 37	AE1	C	81	101	Right-handed alpha
Helix 38	AE2	C	124	136	Right-handed alpha
Helix 39	AE3	C	159	170	Right-handed alpha
Helix 40	AE4	C	172	177	Right-handed alpha
Helix 41	AE5	C	186	190	Right-handed 310
Helix 42	AE6	C	204	217	Right-handed alpha
Helix 43	AE7	C	223	227	Right-handed 310
Helix 44	AE8	C	253	263	Right-handed alpha
Helix 45	AE9	C	282	288	Right-handed alpha
Helix 46	AF1	C	291	299	Right-handed alpha
Helix 47	AF2	C	301	306	Right-handed alpha
Helix 48	AF3	C	318	326	Right-handed alpha
Helix 49	AF4	C	332	343	Right-handed alpha
Helix 50	AF5	C	351	366	Right-handed alpha
Helix 51	AF6	C	368	371	Right-handed 310
Helix 52	AF7	C	372	387	Right-handed alpha
Helix 53	AF8	C	399	405	Right-handed alpha
Helix 54	AF9	D	66	78	Right-handed alpha
Helix 55	AG1	D	81	101	Right-handed alpha
Helix 56	AG2	D	124	136	Right-handed alpha
Helix 57	AG3	D	159	170	Right-handed alpha
Helix 58	AG4	D	172	177	Right-handed alpha
Helix 59	AG5	D	204	217	Right-handed alpha
Helix 60	AG6	D	253	264	Right-handed alpha
Helix 61	AG7	D	282	287	Right-handed alpha
Helix 62	AG8	D	288	290	Right-handed 310
Helix 63	AG9	D	291	299	Right-handed alpha
Helix 64	AH1	D	301	307	Right-handed alpha
Helix 65	AH2	D	318	328	Right-handed alpha
Helix 66	AH3	D	332	343	Right-handed alpha
Helix 67	AH4	D	351	366	Right-handed alpha
Helix 68	AH5	D	368	371	Right-handed 310
Helix 69	AH6	D	372	387	Right-handed alpha
Helix 70	AH7	D	399	405	Right-handed alpha
Helix 71	AH8	E	66	76	Right-handed alpha
Helix 72	AH9	E	82	102	Right-handed alpha
Helix 73	AI1	E	124	136	Right-handed alpha
Helix 74	AI2	E	159	170	Right-handed alpha
Helix 75	AI3	E	172	177	Right-handed alpha
Helix 76	AI4	E	186	190	Right-handed 310
Helix 77	AI5	E	204	217	Right-handed alpha
Helix 78	AI6	E	253	263	Right-handed alpha
Helix 79	AI7	E	282	288	Right-handed alpha
Helix 80	AI8	E	291	299	Right-handed alpha
Helix 81	AI9	E	301	308	Right-handed alpha
Helix 82	AJ1	E	318	326	Right-handed alpha
Helix 83	AJ2	E	332	343	Right-handed alpha
Helix 84	AJ3	E	351	365	Right-handed alpha
Helix 85	AJ4	E	368	371	Right-handed 310
Helix 86	AJ5	E	372	380	Right-handed alpha
Helix 87	AJ6	E	380	387	Right-handed alpha
Helix 88	AJ7	E	399	405	Right-handed alpha
Helix 89	AJ8	F	66	78	Right-handed alpha
Helix 90	AJ9	F	82	101	Right-handed alpha
Helix 91	AK1	F	124	136	Right-handed alpha
Helix 92	AK2	F	158	169	Right-handed alpha
Helix 93	AK3	F	172	178	Right-handed alpha
Helix 94	AK4	F	185	190	Right-handed 310
Helix 95	AK5	F	204	215	Right-handed alpha
Helix 96	AK6	F	223	227	Right-handed 310
Helix 97	AK7	F	253	262	Right-handed alpha
Helix 98	AK8	F	283	289	Right-handed alpha
Helix 99	AK9	F	291	299	Right-handed alpha
Helix 100	AL1	F	301	307	Right-handed alpha
Helix 101	AL2	F	318	328	Right-handed alpha
Helix 102	AL3	F	332	345	Right-handed alpha
Helix 103	AL4	F	351	366	Right-handed alpha
Helix 104	AL5	F	369	371	Right-handed 310
Helix 105	AL6	F	372	387	Right-handed alpha
Helix 106	AL7	F	399	405	Right-handed alpha

There are 17 sheets in PDB entry 6PP5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	140	144	first strand
Strand 2	A	180	184	parallel
Strand 3	A	246	249	parallel
Strand 4	A	115	118	parallel
Strand 5	A	312	313	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	219	222	first strand
Strand 2	A	236	239	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	350	first strand
Strand 2	A	393	398	parallel
Strand 3	A	410	413	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	115	118	first strand
Strand 2	B	310	313	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	140	144	first strand
Strand 2	B	180	184	parallel
Strand 3	B	244	248	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	219	222	first strand
Strand 2	B	236	239	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	350	first strand
Strand 2	B	393	398	parallel
Strand 3	B	410	413	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	180	184	parallel
Strand 3	C	244	248	parallel
Strand 4	C	115	118	parallel
Strand 5	C	310	313	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	219	222	first strand
Strand 2	C	236	239	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	397	first strand
Strand 2	C	410	413	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	140	144	first strand
Strand 2	D	180	184	parallel
Strand 3	D	244	248	parallel
Strand 4	D	115	118	parallel
Strand 5	D	312	313	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	219	222	first strand
Strand 2	D	236	239	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	348	first strand
Strand 2	D	393	397	parallel
Strand 3	D	410	413	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	143	144	first strand
Strand 2	E	180	184	parallel
Strand 3	E	244	248	parallel
Strand 4	E	115	118	parallel
Strand 5	E	312	313	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	350	first strand
Strand 2	E	395	398	parallel
Strand 3	E	410	412	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	140	142	first strand
Strand 2	F	180	183	parallel
Strand 3	F	244	247	parallel
Strand 4	F	115	118	parallel
Strand 5	F	310	313	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	348	first strand
Strand 2	F	395	396	parallel
Strand 3	F	411	412	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6PP5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6PP5