Analysis of interatomic Contacts of Structural Units in PDB entry:
6PPU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6PPU entry

There are 3 chains in PDB entry 6PPU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 22PRO 878
A
 UNK 147GLN 1039
X
 T 2 T 59
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 65 helices in PDB entry 6PPU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
31 36Right-handed alpha
Helix 2
AA2
B
52 55Right-handed 310
Helix 3
AA3
B
56 63Right-handed alpha
Helix 4
AA4
B
81 98Right-handed alpha
Helix 5
AA5
B
119 130Right-handed alpha
Helix 6
AA6
B
146 157Right-handed alpha
Helix 7
AA7
B
175 180Right-handed alpha
Helix 8
AA8
B
200 206Right-handed alpha
Helix 9
AA9
B
220 228Right-handed alpha
Helix 10
AB1
B
228 233Right-handed alpha
Helix 11
AB2
B
235 239Right-handed 310
Helix 12
AB3
B
242 247Right-handed alpha
Helix 13
AB4
B
253 262Right-handed alpha
Helix 14
AB5
B
268 279Right-handed alpha
Helix 15
AB6
B
286 290Right-handed 310
Helix 16
AB7
B
297 302Right-handed alpha
Helix 17
AB8
B
366 372Right-handed alpha
Helix 18
AB9
B
402 416Right-handed alpha
Helix 19
AC1
B
440 452Right-handed alpha
Helix 20
AC2
B
462 466Right-handed 310
Helix 21
AC3
B
468 481Right-handed alpha
Helix 22
AC4
B
484 488Right-handed 310
Helix 23
AC5
B
500 514Right-handed alpha
Helix 24
AC6
B
523 530Right-handed alpha
Helix 25
AC7
B
539 543Right-handed 310
Helix 26
AC8
B
557 573Right-handed alpha
Helix 27
AC9
B
578 590Right-handed alpha
Helix 28
AD1
B
601 605Right-handed 310
Helix 29
AD2
B
610 623Right-handed alpha
Helix 30
AD3
B
638 643Right-handed alpha
Helix 31
AD4
B
735 748Right-handed alpha
Helix 32
AD5
B
750 759Right-handed alpha
Helix 33
AD6
B
783 794Right-handed alpha
Helix 34
AD7
B
839 851Right-handed alpha
Helix 35
AD8
B
863 876Right-handed alpha
Helix 36
AD9
A
177 179Right-handed 310
Helix 37
AE1
A
180 185Right-handed alpha
Helix 38
AE2
A
187 196Right-handed alpha
Helix 39
AE3
A
316 321Right-handed alpha
Helix 40
AE4
A
356 374Right-handed alpha
Helix 41
AE5
A
400 404Right-handed 310
Helix 42
AE6
A
419 433Right-handed alpha
Helix 43
AE7
A
438 447Right-handed alpha
Helix 44
AE8
A
457 469Right-handed alpha
Helix 45
AE9
A
476 487Right-handed alpha
Helix 46
AF1
A
495 508Right-handed alpha
Helix 47
AF2
A
520 531Right-handed alpha
Helix 48
AF3
A
536 540Right-handed alpha
Helix 49
AF4
A
547 569Right-handed alpha
Helix 50
AF5
A
578 586Right-handed alpha
Helix 51
AF6
A
643 647Right-handed alpha
Helix 52
AF7
A
701 707Right-handed alpha
Helix 53
AF8
A
727 740Right-handed alpha
Helix 54
AF9
A
752 763Right-handed alpha
Helix 55
AG1
A
798 803Right-handed alpha
Helix 56
AG2
A
809 815Right-handed alpha
Helix 57
AG3
A
823 827Right-handed 310
Helix 58
AG4
A
828 838Right-handed alpha
Helix 59
AG5
A
842 854Right-handed alpha
Helix 60
AG6
A
863 873Right-handed alpha
Helix 61
AG7
A
874 884Right-handed alpha
Helix 62
AG8
A
952 961Right-handed alpha
Helix 63
AG9
A
996 1001Right-handed alpha
Helix 64
AH1
A
1003 1012Right-handed alpha
Helix 65
AH2
A
1013 1015Right-handed 310
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There are 6 sheets in PDB entry 6PPU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 118first strand
Strand 2
B
74 78parallel
Strand 3
B
281 284parallel
Strand 4
B
311 315parallel
Strand 5
B
43 46parallel
Strand 6
B
350 353parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
251 252parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
765 767parallel
Strand 3
B
674 677parallel
Strand 4
B
431 433parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
829 830first strand
Strand 2
A
1019 1020anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 354first strand
Strand 2
A
684 689parallel
Strand 3
A
618 622parallel
Strand 4
A
382 386parallel
Strand 5
A
604 607parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
891 897first strand
Strand 2
A
919 924anti-parallel
Strand 3
A
930 933anti-parallel
Strand 4
A
973 978parallel
Strand 5
A
988 992anti-parallel
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