Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q0K entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 6Q0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 449ALA 728
A
 GLU 730GLY 737
B
 ASP 449ALA 728
B
 GLU 730LEU 733
X
 ASP 2SER 230
Y
 ASP 2SER 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 6Q0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
491 506Right-handed alpha
Helix 2
AA2
A
536 543Right-handed alpha
Helix 3
AA3
A
549 570Right-handed alpha
Helix 4
AA4
A
586 588Right-handed 310
Helix 5
AA5
A
616 620Right-handed 310
Helix 6
AA6
A
621 627Right-handed alpha
Helix 7
AA7
A
634 652Right-handed alpha
Helix 8
AA8
A
661 671Right-handed alpha
Helix 9
AA9
A
677 681Right-handed 310
Helix 10
AB1
A
686 697Right-handed alpha
Helix 11
AB2
A
700 704Right-handed 310
Helix 12
AB3
A
706 718Right-handed alpha
Helix 13
AB4
B
491 506Right-handed alpha
Helix 14
AB5
B
536 543Right-handed alpha
Helix 15
AB6
B
549 570Right-handed alpha
Helix 16
AB7
B
586 588Right-handed 310
Helix 17
AB8
B
616 620Right-handed 310
Helix 18
AB9
B
621 627Right-handed alpha
Helix 19
AC1
B
634 652Right-handed alpha
Helix 20
AC2
B
661 671Right-handed alpha
Helix 21
AC3
B
677 681Right-handed 310
Helix 22
AC4
B
686 697Right-handed alpha
Helix 23
AC5
B
700 704Right-handed 310
Helix 24
AC6
B
706 718Right-handed alpha
Helix 25
AC7
X
3 16Right-handed alpha
Helix 26
AC8
X
18 32Right-handed alpha
Helix 27
AC9
X
37 69Right-handed alpha
Helix 28
AD1
X
72 104Right-handed alpha
Helix 29
AD2
X
111 132Right-handed alpha
Helix 30
AD3
X
135 160Right-handed alpha
Helix 31
AD4
X
164 181Right-handed alpha
Helix 32
AD5
X
184 201Right-handed alpha
Helix 33
AD6
X
202 206Right-handed 310
Helix 34
AD7
X
210 229Right-handed alpha
Helix 35
AD8
Y
3 16Right-handed alpha
Helix 36
AD9
Y
18 32Right-handed alpha
Helix 37
AE1
Y
37 69Right-handed alpha
Helix 38
AE2
Y
72 104Right-handed alpha
Helix 39
AE3
Y
111 132Right-handed alpha
Helix 40
AE4
Y
135 160Right-handed alpha
Helix 41
AE5
Y
164 181Right-handed alpha
Helix 42
AE6
Y
184 201Right-handed alpha
Helix 43
AE7
Y
202 206Right-handed 310
Helix 44
AE8
Y
210 229Right-handed alpha
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There are 6 sheets in PDB entry 6Q0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
462 464first strand
Strand 2
A
471 475anti-parallel
Strand 3
A
479 484anti-parallel
Strand 4
A
526 530anti-parallel
Strand 5
A
516 520anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 573first strand
Strand 2
A
599 600anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 585first strand
Strand 2
A
589 592anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
462 464first strand
Strand 2
B
471 475anti-parallel
Strand 3
B
479 484anti-parallel
Strand 4
B
526 530anti-parallel
Strand 5
B
516 520anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
572 573first strand
Strand 2
B
599 600anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
582 585first strand
Strand 2
B
589 592anti-parallel
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