Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q0V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q0V entry

There are 5 chains in PDB entry 6Q0V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
MET 1HIS 1140
B
ARG 33HIS 259
C
GLU 383LEU 600
D
ARG 249THR 327
E
ASP 3VAL 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6Q0V. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
250 254Right-handed 310
Helix 2
AA2
A
381 384Right-handed 310
Helix 3
AA3
A
728 730Right-handed 310
Helix 4
AA4
A
755 759Right-handed 310
Helix 5
AA5
A
985 990Right-handed alpha
Helix 6
AA6
A
1044 1062Right-handed alpha
Helix 7
AA7
A
1069 1075Right-handed alpha
Helix 8
AA8
A
1091 1096Right-handed alpha
Helix 9
AA9
A
1097 1100Right-handed 310
Helix 10
AB1
A
1101 1109Right-handed alpha
Helix 11
AB2
A
1125 1138Right-handed alpha
Helix 12
AB3
B
35 47Right-handed alpha
Helix 13
AB4
B
50 54Right-handed 310
Helix 14
AB5
B
65 69Right-handed alpha
Helix 15
AB6
B
70 77Right-handed 310
Helix 16
AB7
B
193 198Right-handed alpha
Helix 17
AB8
B
232 237Right-handed alpha
Helix 18
AB9
C
450 462Right-handed alpha
Helix 19
AC1
C
463 466Right-handed 310
Helix 20
AC2
C
543 563Right-handed alpha
Helix 21
AC3
C
592 594Right-handed 310
Helix 22
AC4
D
262 271Right-handed alpha
Helix 23
AC5
D
272 274Right-handed 310
Helix 24
AC6
D
300 312Right-handed alpha
Helix 25
AC7
E
13 18Right-handed alpha
Helix 26
AC8
E
53 72Right-handed alpha
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There are 25 sheets in PDB entry 6Q0V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1004 1009first strand
Strand 2
A
1025 1032anti-parallel
Strand 3
A
1037 1042anti-parallel
Strand 4
A
4 10anti-parallel
Strand 5
A
1088 1090parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
17 21first strand
Strand 2
A
30 35anti-parallel
Strand 3
A
38 43anti-parallel
Strand 4
A
50 56anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
61 67first strand
Strand 2
A
76 81anti-parallel
Strand 3
A
85 94anti-parallel
Strand 4
A
97 107anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
121 124first strand
Strand 2
A
130 136anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
151 158anti-parallel
Strand 5
E
46 49parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 169first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
187 196anti-parallel
Strand 4
A
201 204anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
164 169first strand
Strand 2
A
177 184anti-parallel
Strand 3
A
187 196anti-parallel
Strand 4
A
210 212anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
218 221first strand
Strand 2
A
229 232anti-parallel
Strand 3
A
237 241anti-parallel
Strand 4
A
244 248anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
258 263first strand
Strand 2
A
270 275anti-parallel
Strand 3
A
279 289anti-parallel
Strand 4
A
295 307anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
311 316first strand
Strand 2
A
321 326anti-parallel
Strand 3
A
331 336anti-parallel
Strand 4
A
347 353anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
361 363first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
711 716anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
720 727first strand
Strand 2
A
732 743anti-parallel
Strand 3
A
749 751anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
720 727first strand
Strand 2
A
732 743anti-parallel
Strand 3
A
786 795anti-parallel
Strand 4
A
801 806anti-parallel
Strand 5
A
762 765parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
811 820first strand
Strand 2
A
827 835anti-parallel
Strand 3
A
846 854anti-parallel
Strand 4
A
857 866anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
870 876first strand
Strand 2
A
879 884anti-parallel
Strand 3
A
887 893anti-parallel
Strand 4
A
899 905anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
911 917first strand
Strand 2
A
920 925anti-parallel
Strand 3
A
930 936anti-parallel
Strand 4
A
941 947anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
954 961first strand
Strand 2
A
964 969anti-parallel
Strand 3
A
973 979anti-parallel
Strand 4
A
992 999anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1076 1077first strand
Strand 2
A
1082 1083anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
61 64first strand
Strand 2
C
596 599parallel
Strand 3
C
588 591anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
79 83first strand
Strand 2
B
89 96anti-parallel
Strand 3
B
106 113anti-parallel
Strand 4
B
121 128anti-parallel
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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
217 224first strand
Strand 2
B
178 186anti-parallel
Strand 3
B
151 157anti-parallel
Strand 4
B
139 144anti-parallel
Strand 5
C
573 575anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
242 246first strand
Strand 2
B
250 258anti-parallel
Strand 3
C
441 449anti-parallel
Strand 4
C
387 394anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
468 482first strand
Strand 2
C
487 498anti-parallel
Strand 3
C
511 522anti-parallel
Strand 4
C
528 533anti-parallel
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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
468 482first strand
Strand 2
C
487 498anti-parallel
Strand 3
C
511 522anti-parallel
Strand 4
C
537 538anti-parallel
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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
276 283first strand
Strand 2
D
290 298anti-parallel
Strand 3
D
250 255anti-parallel
Strand 4
D
322 324anti-parallel
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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
315 316first strand
Strand 2
D
319 320anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il