Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q2J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q2J entry

There are 6 chains in PDB entry 6Q2J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ASP 201ILE 308
C
TRP 129ASN 318
E
LEU 29PRO 622
B
ASP 201ILE 308
D
TRP 129ASN 318
F
LEU 29PRO 622
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 46 helices in PDB entry 6Q2J. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
220 224Right-handed alpha
Helix 2
AA2
A
252 265Right-handed alpha
Helix 3
AA3
C
130 139Right-handed alpha
Helix 4
AA4
C
141 155Right-handed alpha
Helix 5
AA5
C
163 177Right-handed alpha
Helix 6
AA6
C
179 188Right-handed alpha
Helix 7
AA7
C
195 206Right-handed alpha
Helix 8
AA8
C
219 229Right-handed alpha
Helix 9
AA9
C
230 244Right-handed alpha
Helix 10
AB1
C
245 253Right-handed alpha
Helix 11
AB2
C
255 260Right-handed alpha
Helix 12
AB3
C
272 283Right-handed alpha
Helix 13
AB4
C
285 289Right-handed 310
Helix 14
AB5
C
300 312Right-handed alpha
Helix 15
AB6
E
74 78Right-handed 310
Helix 16
AB7
E
102 113Right-handed alpha
Helix 17
AB8
E
156 160Right-handed 310
Helix 18
AB9
E
161 165Right-handed 310
Helix 19
AC1
E
190 197Right-handed alpha
Helix 20
AC2
E
322 327Right-handed alpha
Helix 21
AC3
E
429 433Right-handed 310
Helix 22
AC4
E
475 478Right-handed 310
Helix 23
AC5
E
581 585Right-handed 310
Helix 24
AC6
B
220 224Right-handed alpha
Helix 25
AC7
B
252 265Right-handed alpha
Helix 26
AC8
D
130 139Right-handed alpha
Helix 27
AC9
D
141 155Right-handed alpha
Helix 28
AD1
D
163 177Right-handed alpha
Helix 29
AD2
D
179 188Right-handed alpha
Helix 30
AD3
D
195 206Right-handed alpha
Helix 31
AD4
D
219 229Right-handed alpha
Helix 32
AD5
D
230 244Right-handed alpha
Helix 33
AD6
D
245 253Right-handed alpha
Helix 34
AD7
D
255 260Right-handed alpha
Helix 35
AD8
D
272 283Right-handed alpha
Helix 36
AD9
D
285 289Right-handed 310
Helix 37
AE1
D
300 312Right-handed alpha
Helix 38
AE2
F
74 78Right-handed 310
Helix 39
AE3
F
102 113Right-handed alpha
Helix 40
AE4
F
156 160Right-handed 310
Helix 41
AE5
F
161 165Right-handed 310
Helix 42
AE6
F
190 197Right-handed alpha
Helix 43
AE7
F
322 327Right-handed alpha
Helix 44
AE8
F
429 433Right-handed 310
Helix 45
AE9
F
475 478Right-handed 310
Helix 46
AF1
F
581 585Right-handed 310
Back to top of page

There are 34 sheets in PDB entry 6Q2J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
212 219first strand
Strand 2
A
234 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
273 288first strand
Strand 2
A
291 308anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
30 31first strand
Strand 2
E
55 56anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
35 36first strand
Strand 2
E
142 153parallel
Strand 3
E
39 42parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
35 36first strand
Strand 2
E
142 153parallel
Strand 3
E
121 126anti-parallel
Strand 4
E
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
49 52first strand
Strand 2
E
94 97anti-parallel
Strand 3
E
86 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
71 72first strand
Strand 2
E
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
174 177first strand
Strand 2
E
253 263parallel
Strand 3
E
236 245anti-parallel
Strand 4
E
202 206anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
184 187first strand
Strand 2
E
222 225anti-parallel
Strand 3
E
214 217anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
278 283first strand
Strand 2
E
388 397parallel
Strand 3
E
368 378anti-parallel
Strand 4
E
314 318anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
292 300first strand
Strand 2
E
347 358anti-parallel
Strand 3
E
329 340anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
407 408first strand
Strand 2
E
495 505parallel
Strand 3
E
411 413parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
407 408first strand
Strand 2
E
495 505parallel
Strand 3
E
480 489anti-parallel
Strand 4
E
438 443anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
421 425first strand
Strand 2
E
462 467anti-parallel
Strand 3
E
452 457anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
542 544first strand
Strand 2
E
557 559anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
589 591first strand
Strand 2
E
617 621parallel
Strand 3
E
608 612anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
594 596first strand
Strand 2
E
602 605anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
212 219first strand
Strand 2
B
234 241anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
273 288first strand
Strand 2
B
291 308anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
30 31first strand
Strand 2
F
55 56anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
35 36first strand
Strand 2
F
142 153parallel
Strand 3
F
39 42parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
35 36first strand
Strand 2
F
142 153parallel
Strand 3
F
121 126anti-parallel
Strand 4
F
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
49 52first strand
Strand 2
F
94 97anti-parallel
Strand 3
F
86 89anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
71 72first strand
Strand 2
F
81 82anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
174 177first strand
Strand 2
F
253 263parallel
Strand 3
F
236 245anti-parallel
Strand 4
F
202 206anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
184 187first strand
Strand 2
F
222 225anti-parallel
Strand 3
F
214 217anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
278 283first strand
Strand 2
F
388 397parallel
Strand 3
F
368 378anti-parallel
Strand 4
F
314 318anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
292 300first strand
Strand 2
F
347 358anti-parallel
Strand 3
F
329 340anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
407 408first strand
Strand 2
F
495 505parallel
Strand 3
F
411 413parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
407 408first strand
Strand 2
F
495 505parallel
Strand 3
F
480 489anti-parallel
Strand 4
F
438 443anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
421 425first strand
Strand 2
F
462 467anti-parallel
Strand 3
F
452 457anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
542 544first strand
Strand 2
F
557 559anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
589 591first strand
Strand 2
F
617 621parallel
Strand 3
F
608 612anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
F
594 596first strand
Strand 2
F
602 605anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il