Analysis of interatomic Contacts of Structural Units in PDB entry:
6Q3W


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6Q3W entry

There are 4 chains in PDB entry 6Q3W (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ALA 2LEU 392
B
ALA 2LEU 392
C
ALA 2LEU 392
D
GLN 8ARG 297
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 6Q3W. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
8 25Right-handed alpha
Helix 2
AA2
A
45 49Right-handed 310
Helix 3
AA3
A
104 117Right-handed alpha
Helix 4
AA4
A
140 157Right-handed alpha
Helix 5
AA5
A
162 178Right-handed alpha
Helix 6
AA6
A
184 193Right-handed alpha
Helix 7
AA7
A
230 250Right-handed alpha
Helix 8
AA8
A
254 258Right-handed 310
Helix 9
AA9
A
259 266Right-handed alpha
Helix 10
AB1
A
267 270Right-handed 310
Helix 11
AB2
A
271 298Right-handed alpha
Helix 12
AB3
A
299 317Right-handed alpha
Helix 13
AB4
A
322 334Right-handed alpha
Helix 14
AB5
A
360 372Right-handed alpha
Helix 15
AB6
B
10 25Right-handed alpha
Helix 16
AB7
B
45 49Right-handed 310
Helix 17
AB8
B
106 116Right-handed alpha
Helix 18
AB9
B
140 157Right-handed alpha
Helix 19
AC1
B
162 179Right-handed alpha
Helix 20
AC2
B
184 193Right-handed alpha
Helix 21
AC3
B
235 250Right-handed alpha
Helix 22
AC4
B
254 258Right-handed 310
Helix 23
AC5
B
259 265Right-handed alpha
Helix 24
AC6
B
271 297Right-handed alpha
Helix 25
AC7
B
299 317Right-handed alpha
Helix 26
AC8
B
322 334Right-handed alpha
Helix 27
AC9
B
360 371Right-handed alpha
Helix 28
AD1
C
8 25Right-handed alpha
Helix 29
AD2
C
45 49Right-handed 310
Helix 30
AD3
C
105 117Right-handed alpha
Helix 31
AD4
C
140 157Right-handed alpha
Helix 32
AD5
C
162 179Right-handed alpha
Helix 33
AD6
C
184 193Right-handed alpha
Helix 34
AD7
C
234 250Right-handed alpha
Helix 35
AD8
C
259 265Right-handed alpha
Helix 36
AD9
C
266 270Right-handed 310
Helix 37
AE1
C
271 273Right-handed 310
Helix 38
AE2
C
275 298Right-handed alpha
Helix 39
AE3
C
299 317Right-handed alpha
Helix 40
AE4
C
322 333Right-handed alpha
Helix 41
AE5
C
360 371Right-handed alpha
Helix 42
AE6
D
9 14Right-handed alpha
Helix 43
AE7
D
42 49Right-handed 310
Helix 44
AE8
D
106 116Right-handed alpha
Helix 45
AE9
D
140 157Right-handed alpha
Helix 46
AF1
D
162 174Right-handed alpha
Helix 47
AF2
D
186 193Right-handed alpha
Helix 48
AF3
D
235 250Right-handed alpha
Helix 49
AF4
D
254 258Right-handed 310
Helix 50
AF5
D
259 265Right-handed alpha
Helix 51
AF6
D
271 297Right-handed alpha
Helix 52
AF7
D
299 317Right-handed alpha
Helix 53
AF8
D
322 333Right-handed alpha
Helix 54
AF9
D
360 371Right-handed alpha
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There are 10 sheets in PDB entry 6Q3W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
87 91first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
125 131parallel
Strand 4
A
54 67anti-parallel
Strand 5
A
30 39anti-parallel
Strand 6
A
388 391anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
51 52first strand
Strand 2
A
197 202anti-parallel
Strand 3
A
208 212anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
338 343first strand
Strand 2
A
349 357anti-parallel
Strand 3
A
218 228anti-parallel
Strand 4
A
377 380anti-parallel
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There are 12 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
87 91first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
124 131parallel
Strand 4
B
51 68anti-parallel
Strand 5
B
197 202anti-parallel
Strand 6
B
208 212anti-parallel
Strand 7
C
208 212anti-parallel
Strand 8
C
197 202anti-parallel
Strand 9
C
51 67anti-parallel
Strand 10
C
125 131anti-parallel
Strand 11
C
72 77parallel
Strand 12
C
87 91anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
388 391first strand
Strand 2
B
30 41anti-parallel
Strand 3
B
51 68anti-parallel
Strand 4
B
197 202anti-parallel
Strand 5
B
208 212anti-parallel
Strand 6
C
208 212anti-parallel
Strand 7
C
197 202anti-parallel
Strand 8
C
51 67anti-parallel
Strand 9
C
30 41anti-parallel
Strand 10
C
388 391anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
338 343first strand
Strand 2
B
349 357anti-parallel
Strand 3
B
218 228anti-parallel
Strand 4
B
377 380anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
338 343first strand
Strand 2
C
349 357anti-parallel
Strand 3
C
218 228anti-parallel
Strand 4
C
377 380anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
73 77first strand
Strand 2
D
125 131parallel
Strand 3
D
51 66anti-parallel
Strand 4
D
197 202anti-parallel
Strand 5
D
208 212anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
73 77first strand
Strand 2
D
125 131parallel
Strand 3
D
51 66anti-parallel
Strand 4
D
30 41anti-parallel
Strand 5
D
388 391anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
338 344first strand
Strand 2
D
349 357anti-parallel
Strand 3
D
218 228anti-parallel
Strand 4
D
377 381anti-parallel
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