Analysis of interatomic Contacts of Structural Units in PDB entry:
6QI4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6QI4 entry

There are 2 chains in PDB entry 6QI4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LYS 3LEU 189
C
 LYS 3GLY 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 6QI4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
9 19Right-handed alpha
Helix 2
AA2
B
23 38Right-handed alpha
Helix 3
AA3
B
44 56Right-handed alpha
Helix 4
AA4
B
61 73Right-handed alpha
Helix 5
AA5
B
82 95Right-handed alpha
Helix 6
AA6
B
96 109Right-handed alpha
Helix 7
AA7
B
118 133Right-handed alpha
Helix 8
AA8
B
134 136Right-handed 310
Helix 9
AA9
B
139 143Right-handed 310
Helix 10
AB1
B
144 157Right-handed alpha
Helix 11
AB2
B
166 176Right-handed alpha
Helix 12
AB3
B
176 184Right-handed alpha
Helix 13
AB4
C
9 20Right-handed alpha
Helix 14
AB5
C
23 38Right-handed alpha
Helix 15
AB6
C
44 56Right-handed alpha
Helix 16
AB7
C
61 73Right-handed alpha
Helix 17
AB8
C
82 95Right-handed alpha
Helix 18
AB9
C
96 109Right-handed alpha
Helix 19
AC1
C
118 133Right-handed alpha
Helix 20
AC2
C
139 143Right-handed 310
Helix 21
AC3
C
144 157Right-handed alpha
Helix 22
AC4
C
165 176Right-handed alpha
Helix 23
AC5
C
176 184Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6QI4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 43first strand
Strand 2
B
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
163 165anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 43first strand
Strand 2
C
80 81anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
116 117first strand
Strand 2
C
163 164anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il