Analysis of interatomic Contacts of Structural Units in PDB entry:
6R6U


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R6U entry

There are 3 chains in PDB entry 6R6U (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4GLU 354
A
 GLN 356PRO 461
B
 SER 5LEU 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 6R6U. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 17Right-handed alpha
Helix 2
AA2
A
18 22Right-handed 310
Helix 3
AA3
A
23 45Right-handed alpha
Helix 4
AA4
A
47 58Right-handed alpha
Helix 5
AA5
A
77 91Right-handed alpha
Helix 6
AA6
A
104 107Right-handed 310
Helix 7
AA7
A
108 119Right-handed alpha
Helix 8
AA8
A
126 146Right-handed alpha
Helix 9
AA9
A
147 153Right-handed 310
Helix 10
AB1
A
159 178Right-handed alpha
Helix 11
AB2
A
180 193Right-handed alpha
Helix 12
AB3
A
198 202Right-handed 310
Helix 13
AB4
A
206 227Right-handed alpha
Helix 14
AB5
A
241 246Right-handed 310
Helix 15
AB6
A
256 260Right-handed 310
Helix 16
AB7
A
262 266Right-handed 310
Helix 17
AB8
A
278 297Right-handed alpha
Helix 18
AB9
A
302 304Right-handed 310
Helix 19
AC1
A
316 320Right-handed 310
Helix 20
AC2
A
326 332Right-handed alpha
Helix 21
AC3
A
333 345Right-handed alpha
Helix 22
AC4
A
348 352Right-handed 310
Helix 23
AC5
A
353 358Right-handed alpha
Helix 24
AC6
A
359 367Right-handed alpha
Helix 25
AC7
A
414 427Right-handed alpha
Helix 26
AC8
A
431 444Right-handed alpha
Helix 27
AC9
A
445 448Right-handed 310
Helix 28
AD1
A
451 459Right-handed alpha
Helix 29
AD2
B
6 17Right-handed alpha
Helix 30
AD3
B
18 22Right-handed 310
Helix 31
AD4
B
23 45Right-handed alpha
Helix 32
AD5
B
47 58Right-handed alpha
Helix 33
AD6
B
77 91Right-handed alpha
Helix 34
AD7
B
104 107Right-handed 310
Helix 35
AD8
B
108 119Right-handed alpha
Helix 36
AD9
B
126 146Right-handed alpha
Helix 37
AE1
B
147 153Right-handed 310
Helix 38
AE2
B
159 178Right-handed alpha
Helix 39
AE3
B
180 193Right-handed alpha
Helix 40
AE4
B
198 202Right-handed 310
Helix 41
AE5
B
207 228Right-handed alpha
Helix 42
AE6
B
234 238Right-handed 310
Helix 43
AE7
B
241 246Right-handed 310
Helix 44
AE8
B
262 266Right-handed 310
Helix 45
AE9
B
278 296Right-handed alpha
Helix 46
AF1
B
302 304Right-handed 310
Helix 47
AF2
B
316 320Right-handed 310
Helix 48
AF3
B
326 332Right-handed alpha
Helix 49
AF4
B
333 345Right-handed alpha
Helix 50
AF5
B
348 352Right-handed 310
Helix 51
AF6
B
353 358Right-handed alpha
Helix 52
AF7
B
359 367Right-handed alpha
Helix 53
AF8
B
414 427Right-handed alpha
Helix 54
AF9
B
431 444Right-handed alpha
Helix 55
AG1
B
445 448Right-handed 310
Helix 56
AG2
B
451 459Right-handed alpha
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There are 4 sheets in PDB entry 6R6U. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 68first strand
Strand 2
A
71 76anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 372first strand
Strand 2
A
306 312parallel
Strand 3
A
386 392anti-parallel
Strand 4
A
397 402anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
66 68first strand
Strand 2
B
71 76anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
369 372first strand
Strand 2
B
306 312parallel
Strand 3
B
386 392anti-parallel
Strand 4
B
397 402anti-parallel
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