Analysis of interatomic Contacts of Structural Units in PDB entry:
6R93


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6R93 entry

There are 11 chains in PDB entry 6R93 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
I
A 1 T 145
J
A 1 DA 94
J
DG 97 T 145
A
LYS 38ALA 136
B
VAL 22GLY 103
C
ARG 12GLU 122
D
ARG 30LYS 126
E
LYS 38ALA 136
F
VAL 22GLY 103
G
ARG 12LYS 119
H
ARG 30LYS 126
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 6R93. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
45 58Right-handed alpha
Helix 2
AA2
A
64 80Right-handed alpha
Helix 3
AA3
A
86 115Right-handed alpha
Helix 4
AA4
A
121 133Right-handed alpha
Helix 5
AA5
B
26 30Right-handed 310
Helix 6
AA6
B
31 42Right-handed alpha
Helix 7
AA7
B
50 77Right-handed alpha
Helix 8
AA8
B
83 94Right-handed alpha
Helix 9
AA9
C
17 23Right-handed alpha
Helix 10
AB1
C
27 37Right-handed alpha
Helix 11
AB2
C
46 74Right-handed alpha
Helix 12
AB3
C
80 90Right-handed alpha
Helix 13
AB4
C
91 98Right-handed alpha
Helix 14
AB5
C
113 117Right-handed 310
Helix 15
AB6
D
38 50Right-handed alpha
Helix 16
AB7
D
56 85Right-handed alpha
Helix 17
AB8
D
91 103Right-handed alpha
Helix 18
AB9
D
104 125Right-handed alpha
Helix 19
AC1
E
45 58Right-handed alpha
Helix 20
AC2
E
64 80Right-handed alpha
Helix 21
AC3
E
86 115Right-handed alpha
Helix 22
AC4
E
121 133Right-handed alpha
Helix 23
AC5
F
26 30Right-handed 310
Helix 24
AC6
F
31 42Right-handed alpha
Helix 25
AC7
F
50 78Right-handed alpha
Helix 26
AC8
F
83 94Right-handed alpha
Helix 27
AC9
G
17 23Right-handed alpha
Helix 28
AD1
G
27 37Right-handed alpha
Helix 29
AD2
G
46 74Right-handed alpha
Helix 30
AD3
G
80 90Right-handed alpha
Helix 31
AD4
G
91 98Right-handed alpha
Helix 32
AD5
G
113 117Right-handed 310
Helix 33
AD6
H
38 50Right-handed alpha
Helix 34
AD7
H
56 85Right-handed alpha
Helix 35
AD8
H
91 103Right-handed alpha
Helix 36
AD9
H
104 125Right-handed alpha
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There are 10 sheets in PDB entry 6R93. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
84 85first strand
Strand 2
B
81 82parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
119 120first strand
Strand 2
B
46 47parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
97 99first strand
Strand 2
G
101 103parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
43 44first strand
Strand 2
D
89 90parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
78 79first strand
Strand 2
D
54 55parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
101 103first strand
Strand 2
F
97 99parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
84 85first strand
Strand 2
F
81 82parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
E
119 120first strand
Strand 2
F
46 47parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
43 44first strand
Strand 2
H
89 90parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
G
78 79first strand
Strand 2
H
54 55parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il