Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RAR entry

There are 5 chains in PDB entry 6RAR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	T 1	T 21
C	A 22	C 29
C	C 31	C 31
D	C 32	A 42
I	GLU 5	PHE 436

There are 18 helices in PDB entry 6RAR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	I	7	18	Right-handed alpha
Helix 2	AA2	I	20	34	Right-handed alpha
Helix 3	AA3	I	36	48	Right-handed alpha
Helix 4	AA4	I	70	83	Right-handed alpha
Helix 5	AA5	I	87	102	Right-handed alpha
Helix 6	AA6	I	103	110	Right-handed alpha
Helix 7	AA7	I	110	116	Right-handed alpha
Helix 8	AA8	I	124	132	Right-handed alpha
Helix 9	AA9	I	133	139	Right-handed 310
Helix 10	AB1	I	152	158	Right-handed 310
Helix 11	AB2	I	195	209	Right-handed alpha
Helix 12	AB3	I	225	234	Right-handed alpha
Helix 13	AB4	I	254	260	Right-handed alpha
Helix 14	AB5	I	265	279	Right-handed alpha
Helix 15	AB6	I	299	316	Right-handed alpha
Helix 16	AB7	I	358	362	Right-handed 310
Helix 17	AB8	I	388	398	Right-handed alpha
Helix 18	AB9	I	398	403	Right-handed alpha

There are 5 sheets in PDB entry 6RAR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	147	150	first strand
Strand 2	I	334	341	parallel
Strand 3	I	320	324	anti-parallel
Strand 4	I	161	167	anti-parallel
Strand 5	I	293	296	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	191	192	first strand
Strand 2	I	181	185	anti-parallel
Strand 3	I	171	178	anti-parallel
Strand 4	I	215	222	anti-parallel
Strand 5	I	245	253	anti-parallel
Strand 6	I	287	289	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	261	262	first strand
Strand 2	I	330	331	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	377	383	first strand
Strand 2	I	365	374	anti-parallel
Strand 3	I	345	356	anti-parallel
Strand 4	I	406	411	anti-parallel
Strand 5	I	429	433	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	413	415	first strand
Strand 2	I	424	426	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RAR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAR