Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RDG entry

There are 20 chains in PDB entry 6RDG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 54	ALA 127
B	SER 54	ALA 127
C	SER 54	ALA 127
D	SER 54	ALA 127
E	SER 54	ALA 127
F	SER 54	ALA 127
G	SER 54	ALA 127
H	SER 54	ALA 127
I	SER 54	ALA 127
J	SER 54	ALA 127
P	LEU 37	LYS 149
Q	ALA 3	ASN 74
R	GLU 23	ALA 199
S	SER 39	MET 315
T	PRO 80	ALA 562
U	ALA 40	ALA 562
V	LYS 43	ALA 562
X	ASP 36	ASN 574
Y	ASP 36	SER 556
Z	PRO 33	ASN 574

There are194 helices in PDB entry 6RDG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	67	Right-handed alpha
Helix 2	AA2	A	70	92	Right-handed alpha
Helix 3	AA3	A	95	125	Right-handed alpha
Helix 4	AA4	B	55	68	Right-handed alpha
Helix 5	AA5	B	69	92	Right-handed alpha
Helix 6	AA6	B	95	126	Right-handed alpha
Helix 7	AA7	C	55	66	Right-handed alpha
Helix 8	AA8	C	67	69	Right-handed 310
Helix 9	AA9	C	70	92	Right-handed alpha
Helix 10	AB1	C	97	126	Right-handed alpha
Helix 11	AB2	D	55	68	Right-handed alpha
Helix 12	AB3	D	70	92	Right-handed alpha
Helix 13	AB4	D	95	126	Right-handed alpha
Helix 14	AB5	E	55	68	Right-handed alpha
Helix 15	AB6	E	70	92	Right-handed alpha
Helix 16	AB7	E	95	109	Right-handed alpha
Helix 17	AB8	E	110	126	Right-handed alpha
Helix 18	AB9	F	55	68	Right-handed alpha
Helix 19	AC1	F	69	90	Right-handed alpha
Helix 20	AC2	F	92	94	Right-handed 310
Helix 21	AC3	F	95	126	Right-handed alpha
Helix 22	AC4	G	55	69	Right-handed alpha
Helix 23	AC5	G	69	92	Right-handed alpha
Helix 24	AC6	G	95	111	Right-handed alpha
Helix 25	AC7	G	113	126	Right-handed alpha
Helix 26	AC8	H	55	66	Right-handed alpha
Helix 27	AC9	H	69	92	Right-handed alpha
Helix 28	AD1	H	95	111	Right-handed alpha
Helix 29	AD2	H	111	126	Right-handed alpha
Helix 30	AD3	I	55	68	Right-handed alpha
Helix 31	AD4	I	70	92	Right-handed alpha
Helix 32	AD5	I	93	96	Right-handed 310
Helix 33	AD6	I	97	127	Right-handed alpha
Helix 34	AD7	J	55	68	Right-handed alpha
Helix 35	AD8	J	69	92	Right-handed alpha
Helix 36	AD9	J	97	126	Right-handed alpha
Helix 37	AE1	P	50	64	Right-handed alpha
Helix 38	AE2	P	66	84	Right-handed alpha
Helix 39	AE3	P	88	93	Right-handed alpha
Helix 40	AE4	P	97	109	Right-handed alpha
Helix 41	AE5	P	115	128	Right-handed alpha
Helix 42	AE6	P	130	132	Right-handed 310
Helix 43	AE7	P	133	149	Right-handed alpha
Helix 44	AE8	Q	9	13	Right-handed 310
Helix 45	AE9	Q	15	29	Right-handed alpha
Helix 46	AF1	Q	32	37	Right-handed alpha
Helix 47	AF2	R	29	38	Right-handed alpha
Helix 48	AF3	R	50	55	Right-handed 310
Helix 49	AF4	R	153	155	Right-handed 310
Helix 50	AF5	R	159	165	Right-handed alpha
Helix 51	AF6	R	176	197	Right-handed alpha
Helix 52	AF7	S	41	71	Right-handed alpha
Helix 53	AF8	S	71	79	Right-handed alpha
Helix 54	AF9	S	82	89	Right-handed alpha
Helix 55	AG1	S	115	128	Right-handed alpha
Helix 56	AG2	S	171	181	Right-handed alpha
Helix 57	AG3	S	227	231	Right-handed 310
Helix 58	AG4	S	238	274	Right-handed alpha
Helix 59	AG5	S	274	313	Right-handed alpha
Helix 60	AG6	T	134	138	Right-handed 310
Helix 61	AG7	T	156	160	Right-handed 310
Helix 62	AG8	T	206	213	Right-handed alpha
Helix 63	AG9	T	230	247	Right-handed alpha
Helix 64	AH1	T	267	280	Right-handed alpha
Helix 65	AH2	T	281	283	Right-handed 310
Helix 66	AH3	T	295	316	Right-handed alpha
Helix 67	AH4	T	326	341	Right-handed alpha
Helix 68	AH5	T	346	350	Right-handed 310
Helix 69	AH6	T	351	353	Right-handed 310
Helix 70	AH7	T	354	363	Right-handed alpha
Helix 71	AH8	T	392	402	Right-handed alpha
Helix 72	AH9	T	409	415	Right-handed alpha
Helix 73	AI1	T	430	435	Right-handed 310
Helix 74	AI2	T	436	441	Right-handed alpha
Helix 75	AI3	T	442	456	Right-handed alpha
Helix 76	AI4	T	458	462	Right-handed 310
Helix 77	AI5	T	470	482	Right-handed alpha
Helix 78	AI6	T	493	506	Right-handed alpha
Helix 79	AI7	T	522	528	Right-handed alpha
Helix 80	AI8	T	530	540	Right-handed alpha
Helix 81	AI9	T	546	556	Right-handed alpha
Helix 82	AJ1	U	41	48	Right-handed alpha
Helix 83	AJ2	U	58	71	Right-handed alpha
Helix 84	AJ3	U	134	138	Right-handed 310
Helix 85	AJ4	U	156	160	Right-handed 310
Helix 86	AJ5	U	206	213	Right-handed alpha
Helix 87	AJ6	U	230	247	Right-handed alpha
Helix 88	AJ7	U	265	280	Right-handed alpha
Helix 89	AJ8	U	281	283	Right-handed 310
Helix 90	AJ9	U	295	315	Right-handed alpha
Helix 91	AK1	U	329	341	Right-handed alpha
Helix 92	AK2	U	346	350	Right-handed 310
Helix 93	AK3	U	351	352	Right-handed 310
Helix 94	AK4	U	353	363	Right-handed alpha
Helix 95	AK5	U	369	373	Right-handed 310
Helix 96	AK6	U	392	402	Right-handed alpha
Helix 97	AK7	U	409	414	Right-handed alpha
Helix 98	AK8	U	436	443	Right-handed alpha
Helix 99	AK9	U	443	455	Right-handed alpha
Helix 100	AL1	U	456	460	Right-handed 310
Helix 101	AL2	U	465	469	Right-handed 310
Helix 102	AL3	U	471	485	Right-handed alpha
Helix 103	AL4	U	493	501	Right-handed alpha
Helix 104	AL5	U	501	506	Right-handed alpha
Helix 105	AL6	U	520	527	Right-handed alpha
Helix 106	AL7	U	530	540	Right-handed alpha
Helix 107	AL8	U	543	553	Right-handed alpha
Helix 108	AL9	V	45	49	Right-handed 310
Helix 109	AM1	V	57	67	Right-handed alpha
Helix 110	AM2	V	134	138	Right-handed 310
Helix 111	AM3	V	156	160	Right-handed 310
Helix 112	AM4	V	206	211	Right-handed alpha
Helix 113	AM5	V	230	247	Right-handed alpha
Helix 114	AM6	V	250	253	Right-handed 310
Helix 115	AM7	V	265	280	Right-handed alpha
Helix 116	AM8	V	281	283	Right-handed 310
Helix 117	AM9	V	295	315	Right-handed alpha
Helix 118	AN1	V	326	341	Right-handed alpha
Helix 119	AN2	V	346	350	Right-handed 310
Helix 120	AN3	V	351	352	Right-handed 310
Helix 121	AN4	V	353	363	Right-handed alpha
Helix 122	AN5	V	369	373	Right-handed 310
Helix 123	AN6	V	392	400	Right-handed alpha
Helix 124	AN7	V	409	414	Right-handed alpha
Helix 125	AN8	V	438	454	Right-handed alpha
Helix 126	AN9	V	455	457	Right-handed 310
Helix 127	AO1	V	470	485	Right-handed alpha
Helix 128	AO2	V	493	506	Right-handed alpha
Helix 129	AO3	V	513	515	Right-handed 310
Helix 130	AO4	V	516	528	Right-handed alpha
Helix 131	AO5	V	530	540	Right-handed alpha
Helix 132	AO6	V	545	555	Right-handed alpha
Helix 133	AO7	X	114	118	Right-handed 310
Helix 134	AO8	X	166	171	Right-handed alpha
Helix 135	AO9	X	188	200	Right-handed alpha
Helix 136	AP1	X	216	230	Right-handed alpha
Helix 137	AP2	X	235	242	Right-handed 310
Helix 138	AP3	X	254	275	Right-handed alpha
Helix 139	AP4	X	287	296	Right-handed alpha
Helix 140	AP5	X	313	323	Right-handed alpha
Helix 141	AP6	X	342	345	Right-handed 310
Helix 142	AP7	X	348	355	Right-handed alpha
Helix 143	AP8	X	356	358	Right-handed 310
Helix 144	AP9	X	365	370	Right-handed alpha
Helix 145	AQ1	X	388	393	Right-handed alpha
Helix 146	AQ2	X	393	418	Right-handed alpha
Helix 147	AQ3	X	430	443	Right-handed alpha
Helix 148	AQ4	X	447	451	Right-handed 310
Helix 149	AQ5	X	462	476	Right-handed alpha
Helix 150	AQ6	X	482	487	Right-handed 310
Helix 151	AQ7	X	491	507	Right-handed alpha
Helix 152	AQ8	X	526	532	Right-handed alpha
Helix 153	AQ9	Y	114	118	Right-handed 310
Helix 154	AR1	Y	149	153	Right-handed 310
Helix 155	AR2	Y	164	170	Right-handed alpha
Helix 156	AR3	Y	188	203	Right-handed alpha
Helix 157	AR4	Y	216	230	Right-handed alpha
Helix 158	AR5	Y	235	242	Right-handed 310
Helix 159	AR6	Y	254	275	Right-handed alpha
Helix 160	AR7	Y	286	301	Right-handed alpha
Helix 161	AR8	Y	313	323	Right-handed alpha
Helix 162	AR9	Y	341	345	Right-handed 310
Helix 163	AS1	Y	348	356	Right-handed alpha
Helix 164	AS2	Y	365	371	Right-handed alpha
Helix 165	AS3	Y	388	412	Right-handed alpha
Helix 166	AS4	Y	413	420	Right-handed alpha
Helix 167	AS5	Y	426	440	Right-handed alpha
Helix 168	AS6	Y	462	476	Right-handed alpha
Helix 169	AS7	Y	491	504	Right-handed alpha
Helix 170	AS8	Y	505	508	Right-handed 310
Helix 171	AS9	Y	526	531	Right-handed alpha
Helix 172	AT1	Y	544	555	Right-handed alpha
Helix 173	AT2	Z	114	118	Right-handed 310
Helix 174	AT3	Z	149	153	Right-handed 310
Helix 175	AT4	Z	164	171	Right-handed alpha
Helix 176	AT5	Z	188	201	Right-handed alpha
Helix 177	AT6	Z	216	230	Right-handed alpha
Helix 178	AT7	Z	235	242	Right-handed 310
Helix 179	AT8	Z	254	275	Right-handed alpha
Helix 180	AT9	Z	287	299	Right-handed alpha
Helix 181	AU1	Z	313	323	Right-handed alpha
Helix 182	AU2	Z	348	355	Right-handed alpha
Helix 183	AU3	Z	356	358	Right-handed 310
Helix 184	AU4	Z	365	371	Right-handed alpha
Helix 185	AU5	Z	388	393	Right-handed alpha
Helix 186	AU6	Z	393	413	Right-handed alpha
Helix 187	AU7	Z	415	421	Right-handed alpha
Helix 188	AU8	Z	422	425	Right-handed 310
Helix 189	AU9	Z	429	443	Right-handed alpha
Helix 190	AV1	Z	450	455	Right-handed alpha
Helix 191	AV2	Z	462	476	Right-handed alpha
Helix 192	AV3	Z	491	505	Right-handed alpha
Helix 193	AV4	Z	507	511	Right-handed 310
Helix 194	AV5	Z	527	533	Right-handed alpha

There are 25 sheets in PDB entry 6RDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	61	63	first strand
Strand 2	Q	47	51	anti-parallel
Strand 3	S	158	163	anti-parallel
Strand 4	S	136	142	parallel
Strand 5	S	99	105	parallel
Strand 6	S	189	197	parallel
Strand 7	S	203	208	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	80	82	first strand
Strand 2	R	70	75	anti-parallel
Strand 3	R	85	86	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	80	82	first strand
Strand 2	R	70	75	anti-parallel
Strand 3	R	142	145	parallel
Strand 4	R	132	136	anti-parallel
Strand 5	R	107	111	anti-parallel
Strand 6	S	232	233	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	96	100	first strand
Strand 2	R	88	93	anti-parallel
Strand 3	R	114	119	anti-parallel
Strand 4	R	124	129	anti-parallel
Strand 5	R	149	151	anti-parallel

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There are 14 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	116	122	first strand
Strand 2	T	107	111	anti-parallel
Strand 3	T	143	150	anti-parallel
Strand 4	T	84	91	anti-parallel
Strand 5	T	94	99	anti-parallel
Strand 6	T	126	132	anti-parallel
Strand 7	T	116	122	anti-parallel
Strand 8	Y	38	44	anti-parallel
Strand 9	Y	101	104	anti-parallel
Strand 10	Y	62	65	anti-parallel
Strand 11	Y	73	81	anti-parallel
Strand 12	Y	84	89	anti-parallel
Strand 13	Y	47	51	anti-parallel
Strand 14	Y	38	44	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	152	155	first strand
Strand 2	T	181	184	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	163	165	first strand
Strand 2	T	285	291	parallel
Strand 3	T	255	264	parallel
Strand 4	T	319	325	parallel
Strand 5	T	376	384	parallel
Strand 6	T	221	225	parallel
Strand 7	T	404	408	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	201	202	first strand
Strand 2	T	215	216	anti-parallel

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There are 14 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	116	122	first strand
Strand 2	U	107	111	anti-parallel
Strand 3	U	143	150	anti-parallel
Strand 4	U	85	91	anti-parallel
Strand 5	U	94	99	anti-parallel
Strand 6	U	127	132	anti-parallel
Strand 7	U	116	122	anti-parallel
Strand 8	X	38	44	anti-parallel
Strand 9	X	101	104	anti-parallel
Strand 10	X	62	65	anti-parallel
Strand 11	X	73	79	anti-parallel
Strand 12	X	84	89	anti-parallel
Strand 13	X	47	52	anti-parallel
Strand 14	X	38	44	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	152	155	first strand
Strand 2	U	181	184	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	163	164	first strand
Strand 2	U	285	290	parallel
Strand 3	U	255	262	parallel
Strand 4	U	319	325	parallel
Strand 5	U	376	384	parallel
Strand 6	U	221	225	parallel
Strand 7	U	404	408	parallel

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There are 14 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	116	122	first strand
Strand 2	V	107	111	anti-parallel
Strand 3	V	143	150	anti-parallel
Strand 4	V	84	91	anti-parallel
Strand 5	V	94	99	anti-parallel
Strand 6	V	127	131	anti-parallel
Strand 7	V	116	122	anti-parallel
Strand 8	Z	37	44	anti-parallel
Strand 9	Z	101	104	anti-parallel
Strand 10	Z	62	65	anti-parallel
Strand 11	Z	73	81	anti-parallel
Strand 12	Z	84	89	anti-parallel
Strand 13	Z	47	51	anti-parallel
Strand 14	Z	37	44	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	152	155	first strand
Strand 2	V	181	184	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	163	164	first strand
Strand 2	V	285	290	parallel
Strand 3	V	255	262	parallel
Strand 4	V	319	325	parallel
Strand 5	V	376	384	parallel
Strand 6	V	221	225	parallel
Strand 7	V	404	408	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	110	111	first strand
Strand 2	X	141	142	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	121	122	first strand
Strand 2	X	244	249	parallel
Strand 3	X	207	213	parallel
Strand 4	X	279	285	parallel
Strand 5	X	332	340	parallel
Strand 6	X	178	183	parallel
Strand 7	X	360	363	parallel
Strand 8	X	383	384	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	158	160	first strand
Strand 2	X	173	175	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	559	561	first strand
Strand 2	X	567	569	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	110	113	first strand
Strand 2	Y	139	142	anti-parallel

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There are 7 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	121	122	first strand
Strand 2	Y	244	250	parallel
Strand 3	Y	208	215	parallel
Strand 4	Y	279	284	parallel
Strand 5	Y	332	338	parallel
Strand 6	Y	178	182	parallel
Strand 7	Y	358	363	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	159	160	first strand
Strand 2	Y	173	174	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	110	113	first strand
Strand 2	Z	139	142	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	121	122	first strand
Strand 2	Z	244	249	parallel
Strand 3	Z	207	213	parallel
Strand 4	Z	279	285	parallel
Strand 5	Z	332	340	parallel
Strand 6	Z	178	183	parallel
Strand 7	Z	360	363	parallel
Strand 8	Z	383	384	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	159	160	first strand
Strand 2	Z	173	174	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	559	561	first strand
Strand 2	Z	567	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RDG

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDG