Analysis of interatomic Contacts of Structural Units in PDB entry:
6RIP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RIP entry

There are 8 chains in PDB entry 6RIP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	A 8	C 39
T	G 1	T 32
A	GLU 7	LEU 234
B	SER 4	VAL 232
C	VAL 2	GLU 1342
D	GLU 16	ARG 1373
E	ALA 2	GLU 74
R	U 1	U 13

There are106 helices in PDB entry 6RIP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	154	159	Right-handed alpha
Helix 5	AA5	A	212	233	Right-handed alpha
Helix 6	AA6	B	34	50	Right-handed alpha
Helix 7	AA7	B	77	87	Right-handed alpha
Helix 8	AA8	B	113	115	Right-handed 310
Helix 9	AA9	B	155	160	Right-handed alpha
Helix 10	AB1	B	212	230	Right-handed alpha
Helix 11	AB2	C	28	39	Right-handed alpha
Helix 12	AB3	C	48	57	Right-handed alpha
Helix 13	AB4	C	81	89	Right-handed alpha
Helix 14	AB5	C	206	213	Right-handed alpha
Helix 15	AB6	C	216	225	Right-handed alpha
Helix 16	AB7	C	242	247	Right-handed 310
Helix 17	AB8	C	270	281	Right-handed alpha
Helix 18	AB9	C	288	293	Right-handed alpha
Helix 19	AC1	C	318	327	Right-handed alpha
Helix 20	AC2	C	345	354	Right-handed alpha
Helix 21	AC3	C	358	371	Right-handed alpha
Helix 22	AC4	C	377	387	Right-handed alpha
Helix 23	AC5	C	398	409	Right-handed alpha
Helix 24	AC6	C	421	438	Right-handed alpha
Helix 25	AC7	C	455	481	Right-handed alpha
Helix 26	AC8	C	488	493	Right-handed alpha
Helix 27	AC9	C	495	508	Right-handed alpha
Helix 28	AD1	C	519	527	Right-handed alpha
Helix 29	AD2	C	607	614	Right-handed alpha
Helix 30	AD3	C	670	674	Right-handed 310
Helix 31	AD4	C	675	688	Right-handed alpha
Helix 32	AD5	C	704	712	Right-handed alpha
Helix 33	AD6	C	820	825	Right-handed alpha
Helix 34	AD7	C	858	863	Right-handed alpha
Helix 35	AD8	C	942	981	Right-handed alpha
Helix 36	AD9	C	985	991	Right-handed alpha
Helix 37	AE1	C	1005	1038	Right-handed alpha
Helix 38	AE2	C	1081	1085	Right-handed 310
Helix 39	AE3	C	1099	1103	Right-handed 310
Helix 40	AE4	C	1109	1134	Right-handed alpha
Helix 41	AE5	C	1137	1151	Right-handed alpha
Helix 42	AE6	C	1160	1164	Right-handed 310
Helix 43	AE7	C	1165	1177	Right-handed alpha
Helix 44	AE8	C	1191	1202	Right-handed alpha
Helix 45	AE9	C	1238	1243	Right-handed alpha
Helix 46	AF1	C	1271	1281	Right-handed alpha
Helix 47	AF2	C	1284	1293	Right-handed alpha
Helix 48	AF3	C	1297	1311	Right-handed alpha
Helix 49	AF4	C	1320	1333	Right-handed alpha
Helix 50	AF5	D	26	34	Right-handed alpha
Helix 51	AF6	D	58	63	Right-handed alpha
Helix 52	AF7	D	77	81	Right-handed 310
Helix 53	AF8	D	96	101	Right-handed alpha
Helix 54	AF9	D	113	118	Right-handed alpha
Helix 55	AG1	D	122	129	Right-handed alpha
Helix 56	AG2	D	131	140	Right-handed alpha
Helix 57	AG3	D	161	172	Right-handed alpha
Helix 58	AG4	D	181	191	Right-handed alpha
Helix 59	AG5	D	193	208	Right-handed alpha
Helix 60	AG6	D	210	230	Right-handed alpha
Helix 61	AG7	D	233	236	Right-handed 310
Helix 62	AG8	D	246	250	Right-handed 310
Helix 63	AG9	D	263	283	Right-handed alpha
Helix 64	AH1	D	288	309	Right-handed alpha
Helix 65	AH2	D	326	332	Right-handed alpha
Helix 66	AH3	D	336	341	Right-handed alpha
Helix 67	AH4	D	370	377	Right-handed alpha
Helix 68	AH5	D	377	389	Right-handed alpha
Helix 69	AH6	D	393	404	Right-handed alpha
Helix 70	AH7	D	407	417	Right-handed alpha
Helix 71	AH8	D	430	432	Right-handed 310
Helix 72	AH9	D	450	452	Right-handed 310
Helix 73	AI1	D	453	458	Right-handed alpha
Helix 74	AI2	D	473	483	Right-handed alpha
Helix 75	AI3	D	485	489	Right-handed 310
Helix 76	AI4	D	503	514	Right-handed alpha
Helix 77	AI5	D	529	540	Right-handed alpha
Helix 78	AI6	D	574	581	Right-handed alpha
Helix 79	AI7	D	588	592	Right-handed 310
Helix 80	AI8	D	597	613	Right-handed alpha
Helix 81	AI9	D	614	636	Right-handed alpha
Helix 82	AJ1	D	640	644	Right-handed 310
Helix 83	AJ2	D	649	670	Right-handed alpha
Helix 84	AJ3	D	674	703	Right-handed alpha
Helix 85	AJ4	D	720	728	Right-handed alpha
Helix 86	AJ5	D	733	742	Right-handed alpha
Helix 87	AJ6	D	768	802	Right-handed alpha
Helix 88	AJ7	D	834	840	Right-handed alpha
Helix 89	AJ8	D	865	876	Right-handed alpha
Helix 90	AJ9	D	895	899	Right-handed 310
Helix 91	AK1	D	914	925	Right-handed alpha
Helix 92	AK2	D	926	930	Right-handed 310
Helix 93	AK3	D	1137	1147	Right-handed alpha
Helix 94	AK4	D	1216	1225	Right-handed alpha
Helix 95	AK5	D	1225	1244	Right-handed alpha
Helix 96	AK6	D	1250	1261	Right-handed alpha
Helix 97	AK7	D	1282	1295	Right-handed alpha
Helix 98	AK8	D	1308	1313	Right-handed alpha
Helix 99	AK9	D	1318	1325	Right-handed alpha
Helix 100	AL1	D	1328	1338	Right-handed alpha
Helix 101	AL2	D	1346	1354	Right-handed alpha
Helix 102	AL3	D	1360	1373	Right-handed alpha
Helix 103	AL4	E	6	13	Right-handed alpha
Helix 104	AL5	E	17	33	Right-handed alpha
Helix 105	AL6	E	45	56	Right-handed alpha
Helix 106	AL7	E	60	74	Right-handed alpha

There are 45 sheets in PDB entry 6RIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	24	31	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	180	189	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	105	first strand
Strand 2	A	139	147	anti-parallel
Strand 3	A	55	61	anti-parallel
Strand 4	A	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	109	first strand
Strand 2	A	132	133	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	31	first strand
Strand 2	B	198	207	anti-parallel
Strand 3	B	180	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	31	first strand
Strand 2	B	198	207	anti-parallel
Strand 3	B	186	190	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	104	first strand
Strand 2	B	140	149	anti-parallel
Strand 3	B	53	59	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	122	123	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	95	105	anti-parallel
Strand 4	C	113	117	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	95	105	anti-parallel
Strand 4	C	122	126	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	513	514	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	453	first strand
Strand 2	C	147	150	anti-parallel
Strand 3	C	530	531	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	158	first strand
Strand 2	C	173	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	197	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	231	first strand
Strand 2	C	332	335	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	606	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	653	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	637	first strand
Strand 2	C	642	646	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	726	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	784	785	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1067	first strand
Strand 2	C	1226	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	817	819	anti-parallel
Strand 6	C	1079	1080	parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	834	835	first strand
Strand 2	C	1048	1054	anti-parallel
Strand 3	C	930	935	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	888	first strand
Strand 2	C	914	915	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	356	anti-parallel
Strand 3	D	447	448	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1269	1270	first strand
Strand 2	D	345	346	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1336	1337	first strand
Strand 2	D	19	23	anti-parallel
Strand 3	D	1341	1343	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	112	first strand
Strand 2	D	238	244	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	146	anti-parallel
Strand 3	D	178	179	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	556	parallel
Strand 3	D	564	573	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	707	first strand
Strand 2	D	714	715	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	826	first strand
Strand 2	D	831	833	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	951	952	first strand
Strand 2	D	1015	1016	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	991	995	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	967	first strand
Strand 2	D	973	975	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1033	1034	first strand
Strand 2	D	1114	1115	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1047	1049	first strand
Strand 2	D	1058	1061	anti-parallel
Strand 3	D	1105	1107	anti-parallel
Strand 4	D	1122	1123	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1077	1078	first strand
Strand 2	D	1099	1100	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1187	1188	first strand
Strand 2	D	1175	1178	anti-parallel
Strand 3	D	1161	1164	anti-parallel
Strand 4	D	1203	1204	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1279	1281	first strand
Strand 2	D	1263	1266	anti-parallel
Strand 3	D	1302	1304	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RIP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RIP