Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RKU entry

There are 8 chains in PDB entry 6RKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
ILE 8ASN 524
B
GLY 402ALA 790
C
ILE 8ASN 524
D
GLY 402ALA 790
F
A 1 G 14
E
A 1 G 14
G
G 15 T 32
H
G 15 T 32
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 70 helices in PDB entry 6RKU. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
15 32Right-handed alpha
Helix 2
AA2
A
42 56Right-handed alpha
Helix 3
AA3
A
66 77Right-handed alpha
Helix 4
AA4
A
82 94Right-handed alpha
Helix 5
AA5
A
95 98Right-handed 310
Helix 6
AA6
A
130 135Right-handed alpha
Helix 7
AA7
A
164 169Right-handed alpha
Helix 8
AA8
A
186 200Right-handed alpha
Helix 9
AA9
A
204 212Right-handed alpha
Helix 10
AB1
A
225 235Right-handed alpha
Helix 11
AB2
A
269 283Right-handed alpha
Helix 12
AB3
A
313 324Right-handed alpha
Helix 13
AB4
A
346 389Right-handed alpha
Helix 14
AB5
A
390 400Right-handed alpha
Helix 15
AB6
A
402 413Right-handed alpha
Helix 16
AB7
A
418 422Right-handed 310
Helix 17
AB8
A
451 460Right-handed alpha
Helix 18
AB9
A
469 494Right-handed alpha
Helix 19
AC1
A
494 514Right-handed alpha
Helix 20
AC2
B
425 436Right-handed alpha
Helix 21
AC3
B
465 472Right-handed alpha
Helix 22
AC4
B
500 518Right-handed alpha
Helix 23
AC5
B
518 524Right-handed alpha
Helix 24
AC6
B
548 561Right-handed alpha
Helix 25
AC7
B
577 598Right-handed alpha
Helix 26
AC8
B
602 609Right-handed alpha
Helix 27
AC9
B
616 621Right-handed 310
Helix 28
AD1
B
622 641Right-handed alpha
Helix 29
AD2
B
678 684Right-handed alpha
Helix 30
AD3
B
684 699Right-handed alpha
Helix 31
AD4
B
718 732Right-handed alpha
Helix 32
AD5
B
741 745Right-handed 310
Helix 33
AD6
B
746 755Right-handed alpha
Helix 34
AD7
B
772 777Right-handed alpha
Helix 35
AD8
B
780 786Right-handed alpha
Helix 36
AD9
C
15 32Right-handed alpha
Helix 37
AE1
C
42 56Right-handed alpha
Helix 38
AE2
C
66 77Right-handed alpha
Helix 39
AE3
C
82 94Right-handed alpha
Helix 40
AE4
C
95 98Right-handed 310
Helix 41
AE5
C
130 135Right-handed alpha
Helix 42
AE6
C
164 169Right-handed alpha
Helix 43
AE7
C
186 200Right-handed alpha
Helix 44
AE8
C
204 212Right-handed alpha
Helix 45
AE9
C
225 235Right-handed alpha
Helix 46
AF1
C
269 283Right-handed alpha
Helix 47
AF2
C
313 324Right-handed alpha
Helix 48
AF3
C
346 389Right-handed alpha
Helix 49
AF4
C
390 400Right-handed alpha
Helix 50
AF5
C
402 413Right-handed alpha
Helix 51
AF6
C
418 422Right-handed 310
Helix 52
AF7
C
451 460Right-handed alpha
Helix 53
AF8
C
469 494Right-handed alpha
Helix 54
AF9
C
494 514Right-handed alpha
Helix 55
AG1
D
425 436Right-handed alpha
Helix 56
AG2
D
465 472Right-handed alpha
Helix 57
AG3
D
500 518Right-handed alpha
Helix 58
AG4
D
518 524Right-handed alpha
Helix 59
AG5
D
548 561Right-handed alpha
Helix 60
AG6
D
577 598Right-handed alpha
Helix 61
AG7
D
602 609Right-handed alpha
Helix 62
AG8
D
616 621Right-handed 310
Helix 63
AG9
D
622 641Right-handed alpha
Helix 64
AH1
D
678 684Right-handed alpha
Helix 65
AH2
D
684 699Right-handed alpha
Helix 66
AH3
D
718 732Right-handed alpha
Helix 67
AH4
D
741 745Right-handed 310
Helix 68
AH5
D
746 755Right-handed alpha
Helix 69
AH6
D
772 777Right-handed alpha
Helix 70
AH7
D
780 786Right-handed alpha
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There are 18 sheets in PDB entry 6RKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
64 65first strand
Strand 2
A
124 127anti-parallel
Strand 3
A
103 106anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
145 147first strand
Strand 2
A
154 156anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
327 333first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
222 223anti-parallel
Strand 4
A
520 521parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
245 250first strand
Strand 2
A
257 263anti-parallel
Strand 3
A
303 307anti-parallel
Strand 4
A
289 294anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
335 337first strand
Strand 2
A
342 344anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
441 446first strand
Strand 2
B
419 424parallel
Strand 3
B
493 495parallel
Strand 4
B
527 529parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
542 546first strand
Strand 2
B
535 539anti-parallel
Strand 3
B
735 738anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
575 576first strand
Strand 2
B
565 566anti-parallel
Strand 3
B
707 708anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
646 653first strand
Strand 2
B
660 667anti-parallel
Strand 3
B
672 676anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
64 65first strand
Strand 2
C
124 127anti-parallel
Strand 3
C
103 106anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
145 147first strand
Strand 2
C
154 156anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
327 333first strand
Strand 2
C
237 243anti-parallel
Strand 3
C
222 223anti-parallel
Strand 4
C
520 521parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
245 250first strand
Strand 2
C
257 263anti-parallel
Strand 3
C
303 307anti-parallel
Strand 4
C
289 294anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
335 337first strand
Strand 2
C
342 344anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
441 446first strand
Strand 2
D
419 424parallel
Strand 3
D
493 495parallel
Strand 4
D
527 529parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
542 546first strand
Strand 2
D
535 539anti-parallel
Strand 3
D
735 738anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
575 576first strand
Strand 2
D
565 566anti-parallel
Strand 3
D
707 708anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
646 653first strand
Strand 2
D
660 667anti-parallel
Strand 3
D
672 676anti-parallel
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