Analysis of interatomic Contacts of Structural Units in PDB entry:
6RP8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RP8 entry

There are 6 chains in PDB entry 6RP8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
h
 GLN 1PRO 218
l
 GLU 1ARG 212
H
 GLN 1PRO 218
L
 GLU 1ARG 212
C
 MET 3ASP 118
c
 MET 3ILE 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 6RP8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
h
28 32Right-handed 310
Helix 2
AA2
h
87 91Right-handed 310
Helix 3
AA3
h
161 163Right-handed 310
Helix 4
AA4
h
190 194Right-handed 310
Helix 5
AA5
h
206 209Right-handed 310
Helix 6
AA6
l
30 32Right-handed 310
Helix 7
AA7
l
80 84Right-handed 310
Helix 8
AA8
l
122 127Right-handed alpha
Helix 9
AA9
l
184 188Right-handed alpha
Helix 10
AB1
H
28 32Right-handed 310
Helix 11
AB2
H
87 91Right-handed 310
Helix 12
AB3
H
161 163Right-handed 310
Helix 13
AB4
H
190 194Right-handed 310
Helix 14
AB5
H
206 209Right-handed 310
Helix 15
AB6
L
30 32Right-handed 310
Helix 16
AB7
L
80 84Right-handed 310
Helix 17
AB8
L
122 127Right-handed alpha
Helix 18
AB9
L
184 188Right-handed alpha
Helix 19
AC1
C
85 89Right-handed 310
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There are 28 sheets in PDB entry 6RP8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
3 7first strand
Strand 2
h
18 25anti-parallel
Strand 3
h
78 83anti-parallel
Strand 4
h
68 73anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
10 12first strand
Strand 2
h
112 116parallel
Strand 3
h
92 99anti-parallel
Strand 4
h
34 39anti-parallel
Strand 5
h
45 51anti-parallel
Strand 6
h
58 60anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
10 12first strand
Strand 2
h
112 116parallel
Strand 3
h
92 99anti-parallel
Strand 4
h
105 108anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
125 129first strand
Strand 2
h
141 150anti-parallel
Strand 3
h
181 189anti-parallel
Strand 4
h
168 170anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
125 129first strand
Strand 2
h
141 150anti-parallel
Strand 3
h
181 189anti-parallel
Strand 4
h
174 175anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
h
156 159first strand
Strand 2
h
200 205anti-parallel
Strand 3
h
210 215anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
4 7first strand
Strand 2
l
19 29anti-parallel
Strand 3
l
63 76anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
10 13first strand
Strand 2
l
103 107parallel
Strand 3
l
86 91anti-parallel
Strand 4
l
34 39anti-parallel
Strand 5
l
46 50anti-parallel
Strand 6
l
54 55anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
10 13first strand
Strand 2
l
103 107parallel
Strand 3
l
86 91anti-parallel
Strand 4
l
98 99anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
115 119first strand
Strand 2
l
130 140anti-parallel
Strand 3
l
174 183anti-parallel
Strand 4
l
160 164anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
l
154 155first strand
Strand 2
l
146 151anti-parallel
Strand 3
l
193 198anti-parallel
Strand 4
l
206 210anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
34 39anti-parallel
Strand 5
H
45 51anti-parallel
Strand 6
H
58 60anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
112 116parallel
Strand 3
H
92 99anti-parallel
Strand 4
H
105 108anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 129first strand
Strand 2
H
141 150anti-parallel
Strand 3
H
181 189anti-parallel
Strand 4
H
168 170anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
125 129first strand
Strand 2
H
141 150anti-parallel
Strand 3
H
181 189anti-parallel
Strand 4
H
174 175anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
156 159first strand
Strand 2
H
199 205anti-parallel
Strand 3
H
210 216anti-parallel
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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
4 7first strand
Strand 2
L
19 29anti-parallel
Strand 3
L
63 76anti-parallel
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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
34 39anti-parallel
Strand 5
L
46 49anti-parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
10 13first strand
Strand 2
L
103 107parallel
Strand 3
L
86 91anti-parallel
Strand 4
L
98 99anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
115 119first strand
Strand 2
L
130 140anti-parallel
Strand 3
L
174 183anti-parallel
Strand 4
L
160 164anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
154 155first strand
Strand 2
L
145 151anti-parallel
Strand 3
L
193 199anti-parallel
Strand 4
L
206 210anti-parallel
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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
19 26anti-parallel
Strand 3
C
76 81anti-parallel
Strand 4
C
68 73anti-parallel
Strand 5
C
61 64anti-parallel
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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
112 116parallel
Strand 3
C
90 100anti-parallel
Strand 4
C
33 42anti-parallel
Strand 5
C
45 55anti-parallel
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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 13first strand
Strand 2
C
112 116parallel
Strand 3
C
90 100anti-parallel
Strand 4
C
105 108anti-parallel
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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
5 6first strand
Strand 2
c
19 25anti-parallel
Strand 3
c
76 81anti-parallel
Strand 4
c
68 73anti-parallel
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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
10 13first strand
Strand 2
c
112 116parallel
Strand 3
c
91 100anti-parallel
Strand 4
c
33 42anti-parallel
Strand 5
c
45 54anti-parallel
Strand 6
c
61 63anti-parallel
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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
c
10 13first strand
Strand 2
c
112 116parallel
Strand 3
c
91 100anti-parallel
Strand 4
c
105 108anti-parallel
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