Analysis of interatomic Contacts of Structural Units in PDB entry:
6RTO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RTO entry

There is 1 chain in PDB entry 6RTO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 6VAL 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6RTO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 18Right-handed alpha
Helix 2
AA2
A
28 42Right-handed alpha
Helix 3
AA3
A
51 54Right-handed 310
Helix 4
AA4
A
55 68Right-handed alpha
Helix 5
AA5
A
84 94Right-handed alpha
Helix 6
AA6
A
96 102Right-handed alpha
Helix 7
AA7
A
116 128Right-handed alpha
Helix 8
AA8
A
152 158Right-handed alpha
Helix 9
AA9
A
158 181Right-handed alpha
Helix 10
AB1
A
186 190Right-handed 310
Helix 11
AB2
A
193 219Right-handed alpha
Helix 12
AB3
A
268 273Right-handed alpha
Helix 13
AB4
A
276 280Right-handed alpha
Helix 14
AB5
A
295 308Right-handed alpha
Helix 15
AB6
A
325 339Right-handed alpha
Helix 16
AB7
A
397 400Right-handed 310
Helix 17
AB8
A
402 406Right-handed 310
Helix 18
AB9
A
432 435Right-handed 310
Helix 19
AC1
A
441 459Right-handed alpha
Helix 20
AC2
A
485 494Right-handed alpha
Helix 21
AC3
A
507 511Right-handed 310
Helix 22
AC4
A
529 531Right-handed 310
Helix 23
AC5
A
543 557Right-handed alpha
Helix 24
AC6
A
560 567Right-handed alpha
Helix 25
AC7
A
574 580Right-handed 310
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There are 7 sheets in PDB entry 6RTO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
20 24parallel
Strand 3
A
74 77anti-parallel
Strand 4
A
80 83anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
133 136parallel
Strand 3
A
108 113parallel
Strand 4
A
245 255parallel
Strand 5
A
235 239anti-parallel
Strand 6
A
227 232anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 224first strand
Strand 2
A
133 136parallel
Strand 3
A
108 113parallel
Strand 4
A
245 255parallel
Strand 5
A
428 430parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 261first strand
Strand 2
A
393 395anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
274 275first strand
Strand 2
A
386 389parallel
Strand 3
A
289 292parallel
Strand 4
A
312 316parallel
Strand 5
A
342 345parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 356first strand
Strand 2
A
367 374anti-parallel
Strand 3
A
379 384anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
471 473first strand
Strand 2
A
479 483anti-parallel
Strand 3
A
534 540anti-parallel
Strand 4
A
520 527anti-parallel
Strand 5
A
498 505anti-parallel
Strand 6
A
583 584anti-parallel
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