Analysis of interatomic Contacts of Structural Units in PDB entry:
6RY4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RY4 entry

There are 2 chains in PDB entry 6RY4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 482ALA 678
B
 LEU 482ALA 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 6RY4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
503 518Right-handed alpha
Helix 2
AA2
A
531 549Right-handed alpha
Helix 3
AA3
A
562 564Right-handed 310
Helix 4
AA4
A
565 573Right-handed alpha
Helix 5
AA5
A
595 600Right-handed alpha
Helix 6
AA6
B
503 518Right-handed alpha
Helix 7
AA7
B
531 548Right-handed alpha
Helix 8
AA8
B
562 564Right-handed 310
Helix 9
AA9
B
565 573Right-handed alpha
Helix 10
AB1
B
575 579Right-handed 310
Helix 11
AB2
B
595 600Right-handed alpha
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There are 4 sheets in PDB entry 6RY4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 498first strand
Strand 2
A
521 530anti-parallel
Strand 3
A
668 677anti-parallel
Strand 4
A
613 621anti-parallel
Strand 5
A
554 561anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 593first strand
Strand 2
A
659 662anti-parallel
Strand 3
A
649 651anti-parallel
Strand 4
A
625 627parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
494 498first strand
Strand 2
B
521 530anti-parallel
Strand 3
B
668 677anti-parallel
Strand 4
B
613 621anti-parallel
Strand 5
B
554 561anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
590 593first strand
Strand 2
B
659 662anti-parallel
Strand 3
B
649 651anti-parallel
Strand 4
B
625 627parallel
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