Analysis of interatomic Contacts of Structural Units in PDB entry:
6S6A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S6A entry

There are 4 chains in PDB entry 6S6A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4GLU 301
B
 ALA 5ARG 302
C
 SER 60VAL 369
D
 SER 60PHE 367
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 6S6A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 29Right-handed alpha
Helix 2
AA2
A
32 39Right-handed 310
Helix 3
AA3
A
66 75Right-handed alpha
Helix 4
AA4
A
77 83Right-handed alpha
Helix 5
AA5
A
98 117Right-handed alpha
Helix 6
AA6
A
129 132Right-handed 310
Helix 7
AA7
A
136 151Right-handed alpha
Helix 8
AA8
A
167 179Right-handed alpha
Helix 9
AA9
A
183 199Right-handed alpha
Helix 10
AB1
A
226 246Right-handed alpha
Helix 11
AB2
A
282 300Right-handed alpha
Helix 12
AB3
B
19 29Right-handed alpha
Helix 13
AB4
B
32 37Right-handed alpha
Helix 14
AB5
B
66 75Right-handed alpha
Helix 15
AB6
B
77 83Right-handed alpha
Helix 16
AB7
B
98 117Right-handed alpha
Helix 17
AB8
B
129 132Right-handed 310
Helix 18
AB9
B
133 135Right-handed 310
Helix 19
AC1
B
136 152Right-handed alpha
Helix 20
AC2
B
167 179Right-handed alpha
Helix 21
AC3
B
183 198Right-handed alpha
Helix 22
AC4
B
226 245Right-handed alpha
Helix 23
AC5
B
284 302Right-handed alpha
Helix 24
AC6
C
73 83Right-handed alpha
Helix 25
AC7
C
132 136Right-handed 310
Helix 26
AC8
C
150 168Right-handed alpha
Helix 27
AC9
C
179 183Right-handed 310
Helix 28
AD1
C
184 205Right-handed alpha
Helix 29
AD2
C
223 235Right-handed alpha
Helix 30
AD3
C
239 253Right-handed alpha
Helix 31
AD4
C
278 299Right-handed alpha
Helix 32
AD5
C
344 347Right-handed 310
Helix 33
AD6
C
348 367Right-handed alpha
Helix 34
AD7
D
73 82Right-handed alpha
Helix 35
AD8
D
130 135Right-handed alpha
Helix 36
AD9
D
150 168Right-handed alpha
Helix 37
AE1
D
184 206Right-handed alpha
Helix 38
AE2
D
223 235Right-handed alpha
Helix 39
AE3
D
239 254Right-handed alpha
Helix 40
AE4
D
278 300Right-handed alpha
Helix 41
AE5
D
348 365Right-handed alpha
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There are 6 sheets in PDB entry 6S6A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 52first strand
Strand 2
A
56 63anti-parallel
Strand 3
A
6 14parallel
Strand 4
A
87 93parallel
Strand 5
A
121 127parallel
Strand 6
A
157 162parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 218first strand
Strand 2
A
202 207anti-parallel
Strand 3
A
270 276anti-parallel
Strand 4
A
260 265anti-parallel
Strand 5
A
249 255anti-parallel
Strand 6
C
315 320anti-parallel
Strand 7
C
324 330anti-parallel
Strand 8
C
335 342anti-parallel
Strand 9
C
258 263anti-parallel
Strand 10
C
269 272anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 52first strand
Strand 2
B
56 63anti-parallel
Strand 3
B
7 13parallel
Strand 4
B
85 93parallel
Strand 5
B
121 127parallel
Strand 6
B
158 162parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 218first strand
Strand 2
B
202 207anti-parallel
Strand 3
B
270 276anti-parallel
Strand 4
B
260 267anti-parallel
Strand 5
B
251 255anti-parallel
Strand 6
D
315 320anti-parallel
Strand 7
D
324 330anti-parallel
Strand 8
D
335 342anti-parallel
Strand 9
D
258 263anti-parallel
Strand 10
D
269 272anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 114first strand
Strand 2
C
63 67parallel
Strand 3
C
139 145parallel
Strand 4
C
172 178parallel
Strand 5
C
213 217parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
112 114first strand
Strand 2
D
64 68parallel
Strand 3
D
139 145parallel
Strand 4
D
172 178parallel
Strand 5
D
214 218parallel
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