Analysis of interatomic Contacts of Structural Units in PDB entry:
6S7T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6S7T entry

There are 10 chains in PDB entry 6S7T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 63	PHE 815
B	MET 1	PRO 33
C	GLU 2	VAL 79
D	SER 10	VAL 112
E	PRO 29	THR 464
F	ILE 369	ALA 630
G	SER 43	LYS 452
H	ASN 215	SER 335
I	VAL 254	CYS 290
K	ALA 1	ALA 1

There are 63 helices in PDB entry 6S7T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	64	87	Right-handed alpha
Helix 2	AA2	A	103	118	Right-handed alpha
Helix 3	AA3	A	118	124	Right-handed alpha
Helix 4	AA4	A	145	160	Right-handed alpha
Helix 5	AA5	A	165	172	Right-handed alpha
Helix 6	AA6	A	172	193	Right-handed alpha
Helix 7	AA7	A	194	205	Right-handed alpha
Helix 8	AA8	A	208	213	Right-handed alpha
Helix 9	AA9	A	214	216	Right-handed 310
Helix 10	AB1	A	222	244	Right-handed alpha
Helix 11	AB2	A	245	263	Right-handed alpha
Helix 12	AB3	A	265	283	Right-handed alpha
Helix 13	AB4	A	287	306	Right-handed alpha
Helix 14	AB5	A	313	318	Right-handed alpha
Helix 15	AB6	A	321	344	Right-handed alpha
Helix 16	AB7	A	349	375	Right-handed alpha
Helix 17	AB8	A	381	390	Right-handed alpha
Helix 18	AB9	A	391	396	Right-handed alpha
Helix 19	AC1	A	397	403	Right-handed alpha
Helix 20	AC2	A	410	417	Right-handed alpha
Helix 21	AC3	A	420	435	Right-handed alpha
Helix 22	AC4	A	437	455	Right-handed alpha
Helix 23	AC5	A	456	457	Right-handed 310
Helix 24	AC6	A	458	459	Right-handed 310
Helix 25	AC7	A	460	483	Right-handed alpha
Helix 26	AC8	A	534	561	Right-handed alpha
Helix 27	AC9	A	582	594	Right-handed alpha
Helix 28	AD1	A	604	606	Right-handed 310
Helix 29	AD2	A	607	614	Right-handed alpha
Helix 30	AD3	A	627	639	Right-handed alpha
Helix 31	AD4	A	641	652	Right-handed alpha
Helix 32	AD5	A	674	686	Right-handed alpha
Helix 33	AD6	A	691	696	Right-handed 310
Helix 34	AD7	A	715	722	Right-handed alpha
Helix 35	AD8	B	3	32	Right-handed alpha
Helix 36	AD9	C	14	16	Right-handed 310
Helix 37	AE1	C	17	42	Right-handed alpha
Helix 38	AE2	C	49	75	Right-handed alpha
Helix 39	AE3	D	11	20	Right-handed alpha
Helix 40	AE4	D	21	49	Right-handed alpha
Helix 41	AE5	D	52	78	Right-handed alpha
Helix 42	AE6	D	79	82	Right-handed 310
Helix 43	AE7	D	89	112	Right-handed alpha
Helix 44	AE8	E	262	268	Right-handed alpha
Helix 45	AE9	E	432	436	Right-handed 310
Helix 46	AF1	E	437	457	Right-handed alpha
Helix 47	AF2	F	538	564	Right-handed alpha
Helix 48	AF3	F	573	596	Right-handed alpha
Helix 49	AF4	F	598	630	Right-handed alpha
Helix 50	AF5	G	55	60	Right-handed alpha
Helix 51	AF6	G	60	71	Right-handed alpha
Helix 52	AF7	G	112	123	Right-handed alpha
Helix 53	AF8	G	135	146	Right-handed alpha
Helix 54	AF9	G	183	188	Right-handed alpha
Helix 55	AG1	G	260	265	Right-handed 310
Helix 56	AG2	G	287	300	Right-handed alpha
Helix 57	AG3	G	422	424	Right-handed 310
Helix 58	AG4	G	425	448	Right-handed alpha
Helix 59	AG5	H	216	231	Right-handed alpha
Helix 60	AG6	H	235	240	Right-handed alpha
Helix 61	AG7	H	265	289	Right-handed alpha
Helix 62	AG8	H	295	325	Right-handed alpha
Helix 63	AG9	I	271	286	Right-handed alpha

There are 19 sheets in PDB entry 6S7T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	127	first strand
Strand 2	A	136	137	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	569	572	first strand
Strand 2	A	578	581	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	618	619	first strand
Strand 2	A	600	602	parallel
Strand 3	A	656	660	parallel
Strand 4	A	767	772	anti-parallel
Strand 5	A	756	761	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	808	809	first strand
Strand 2	G	104	106	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	7	8	first strand
Strand 2	E	342	345	anti-parallel
Strand 3	E	348	354	anti-parallel
Strand 4	E	423	430	anti-parallel
Strand 5	E	378	384	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	81	88	first strand
Strand 2	E	126	135	anti-parallel
Strand 3	E	47	57	anti-parallel
Strand 4	E	31	41	anti-parallel
Strand 5	E	168	176	parallel
Strand 6	E	197	199	anti-parallel
Strand 7	E	192	193	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	68	72	first strand
Strand 2	E	112	116	anti-parallel
Strand 3	E	96	99	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	140	141	first strand
Strand 2	E	153	159	anti-parallel
Strand 3	E	213	219	anti-parallel
Strand 4	E	182	185	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	292	294	first strand
Strand 2	E	327	337	anti-parallel
Strand 3	E	241	252	anti-parallel
Strand 4	E	225	235	anti-parallel
Strand 5	E	364	373	parallel
Strand 6	E	406	417	anti-parallel
Strand 7	E	390	397	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	280	284	first strand
Strand 2	E	312	316	anti-parallel
Strand 3	E	303	307	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	392	395	first strand
Strand 2	F	373	384	anti-parallel
Strand 3	F	412	422	anti-parallel
Strand 4	F	458	463	anti-parallel
Strand 5	F	452	454	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	405	408	first strand
Strand 2	F	495	503	parallel
Strand 3	F	477	485	anti-parallel
Strand 4	F	434	440	anti-parallel
Strand 5	F	446	450	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	73	78	first strand
Strand 2	G	46	51	parallel
Strand 3	G	96	99	parallel
Strand 4	G	125	128	parallel
Strand 5	G	254	257	parallel
Strand 6	G	242	248	anti-parallel
Strand 7	G	215	216	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	147	148	first strand
Strand 2	G	203	204	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	157	first strand
Strand 2	G	222	224	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	173	175	first strand
Strand 2	G	195	197	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	306	308	first strand
Strand 2	G	337	341	anti-parallel
Strand 3	G	344	347	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	312	315	first strand
Strand 2	G	330	335	anti-parallel
Strand 3	G	374	380	anti-parallel
Strand 4	G	369	371	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	362	367	first strand
Strand 2	G	354	358	anti-parallel
Strand 3	G	386	394	anti-parallel
Strand 4	G	402	410	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6S7T

Analysis of interatomic Contacts of Structural Units in PDB entry:
6S7T