Analysis of interatomic Contacts of Structural Units in PDB entry:
6S8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6S8L entry

There are 3 chains in PDB entry 6S8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2GLY 436
B
 ARG 2ALA 440
F
 ASP 13LYS 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 6S8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 29Right-handed alpha
Helix 2
AA2
A
47 51Right-handed 310
Helix 3
AA3
A
72 81Right-handed alpha
Helix 4
AA4
A
88 90Right-handed 310
Helix 5
AA5
A
102 108Right-handed alpha
Helix 6
AA6
A
110 113Right-handed 310
Helix 7
AA7
A
114 128Right-handed alpha
Helix 8
AA8
A
143 161Right-handed alpha
Helix 9
AA9
A
174 178Right-handed 310
Helix 10
AB1
A
182 195Right-handed alpha
Helix 11
AB2
A
206 216Right-handed alpha
Helix 12
AB3
A
223 244Right-handed alpha
Helix 13
AB4
A
251 260Right-handed alpha
Helix 14
AB5
A
287 294Right-handed alpha
Helix 15
AB6
A
295 301Right-handed 310
Helix 16
AB7
A
306 310Right-handed 310
Helix 17
AB8
A
324 337Right-handed alpha
Helix 18
AB9
A
384 400Right-handed alpha
Helix 19
AC1
A
404 410Right-handed alpha
Helix 20
AC2
A
415 436Right-handed alpha
Helix 21
AC3
B
10 29Right-handed alpha
Helix 22
AC4
B
41 48Right-handed alpha
Helix 23
AC5
B
49 51Right-handed 310
Helix 24
AC6
B
72 80Right-handed alpha
Helix 25
AC7
B
83 87Right-handed 310
Helix 26
AC8
B
88 90Right-handed 310
Helix 27
AC9
B
102 109Right-handed alpha
Helix 28
AD1
B
109 128Right-handed alpha
Helix 29
AD2
B
144 161Right-handed alpha
Helix 30
AD3
B
174 178Right-handed 310
Helix 31
AD4
B
182 198Right-handed alpha
Helix 32
AD5
B
206 216Right-handed alpha
Helix 33
AD6
B
223 244Right-handed alpha
Helix 34
AD7
B
251 260Right-handed alpha
Helix 35
AD8
B
287 297Right-handed alpha
Helix 36
AD9
B
298 301Right-handed 310
Helix 37
AE1
B
306 310Right-handed 310
Helix 38
AE2
B
324 338Right-handed alpha
Helix 39
AE3
B
339 343Right-handed 310
Helix 40
AE4
B
384 401Right-handed alpha
Helix 41
AE5
B
404 410Right-handed alpha
Helix 42
AE6
B
414 438Right-handed alpha
Helix 43
AE7
F
14 25Right-handed alpha
Helix 44
AE8
F
26 36Right-handed alpha
Helix 45
AE9
F
49 57Right-handed alpha
Helix 46
AF1
F
59 69Right-handed alpha
Helix 47
AF2
F
82 91Right-handed alpha
Helix 48
AF3
F
92 102Right-handed alpha
Helix 49
AF4
F
115 123Right-handed alpha
Helix 50
AF5
F
125 135Right-handed alpha
Helix 51
AF6
F
148 156Right-handed alpha
Helix 52
AF7
F
158 166Right-handed alpha
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There are 5 sheets in PDB entry 6S8L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
65 69parallel
Strand 3
A
4 9parallel
Strand 4
A
134 140parallel
Strand 5
A
165 172parallel
Strand 6
A
200 205parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 55first strand
Strand 2
A
61 63anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
269 273first strand
Strand 2
A
373 381anti-parallel
Strand 3
A
312 321anti-parallel
Strand 4
A
352 356parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
65 69parallel
Strand 3
B
4 9parallel
Strand 4
B
134 140parallel
Strand 5
B
165 172parallel
Strand 6
B
200 205parallel
Strand 7
B
267 273parallel
Strand 8
B
374 381anti-parallel
Strand 9
B
312 320anti-parallel
Strand 10
B
351 356parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 55first strand
Strand 2
B
61 63anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il